Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq822 188 1e-42 >seq822 Length=1165972 Score = 188 bits (208), Expect = 1e-42 Identities = 610/936 (65%), Gaps = 16/936 (2%) Strand=Plus/Minus Query 77675 CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTAT 77734 || ||||| ||| || || || || || || ||||| | || | ||| | || || Sbjct 797377 CAGAGCTAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCAATAAT 797318 Query 77735 CTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT 77794 || || || || ||| || | ||| ||||| || || | |||||||||||| || Sbjct 797317 TTCAGTGCACAGGTTAGAACTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTT 797258 Query 77795 GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGA 77854 || | ||||| || || || || || | || || ||| |||| | || | ||| | Sbjct 797257 ACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGC 797198 Query 77855 TTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCCT-CTCTCTTTC----ATA 77908 | ||| | | ||| ||| || || || ||| | | | | ||| ||| || Sbjct 797197 ATACCAAA-GCTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTCGTATT 797142 Query 77909 TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATT 77968 || ||| | |||| || || || || || | || | | |||||||| || || Sbjct 797141 TTTCGTAAAGAGCC--TCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTT 797084 Query 77969 TGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTAT 78028 |||||||||| || ||||||||| | | | ||| || |||||||| |||||||| || Sbjct 797083 GGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGAT 797024 Query 78029 CCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAG 78088 ||| || || | || || || |||| | || || || || |||||| || Sbjct 797023 CCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTTCGGAG 796964 Query 78089 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGG 78148 ||| || || || | | |||||| ||||| || || || || || || | | | || || Sbjct 796963 ATCAAGGAATTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 796904 Query 78149 TCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG 78208 ||| || || || |||||||| | ||| | || ||||| || | || | | ||| || Sbjct 796903 TCGCTTGTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 796844 Query 78209 AATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATT 78268 || || ||||| ||||| || || || || | || || ||| | || |||||| Sbjct 796843 AACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGAATACG 796784 Query 78269 ACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGT 78328 | | | || || ||||| |||||||| || || | || || || | || Sbjct 796783 GTGCACGTTCAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGT 796724 Query 78329 ATCGTAGATACCCTCTATACTGTCATCCATCATGT-TAAGAAGAAAACAGCTAGACATTT 78387 ||||||||| ||||| |||||||| ||| |||| | | ||||| || | |||| || Sbjct 796723 ATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGAT-GACAATT 796665 Query 78388 GATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAG 78447 | | ||| || || || || || | ||| ||||| ||||| ||||| |||| | Sbjct 796664 GGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGG 796605 Query 78448 AAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCT 78506 | | || |||||||| || | || || || || || | || || || | Sbjct 796604 ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCGTCACCCCAG-ATACCAACAGAC 796546 Query 78507 ACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTAT 78566 |||||||| | |||||||||||| | || || ||||| | || || | | ||| Sbjct 796545 ACACGCATGATCATATGCTGAGGCCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAG 796486 Query 78567 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 78602 ||| |||||||| || || ||||| || | |||| Sbjct 796485 GATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTAT 796450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654637439840