Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq486 116 9e-21
seq1496 109 1e-18
seq1259 98.7 2e-15
seq822 84.2 5e-11
>seq486
Length=637844
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| |||||||| ||||| || || || |||||||| ||||| | ||||
Sbjct 83039 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCG 83098
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || || || ||||| || | |||||| || | | ||| || ||
Sbjct 83099 GCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTC 83158
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || ||| |||||| | || | | | || || ||| || || |||||
Sbjct 83159 CTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAACCTCGAGAGT 83218
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
||||||||||| ||||| ||||| ||||
Sbjct 83219 GATAGTTTTGCCAGTGAGTGTCTTGACGA 83247
Score = 107 bits (118), Expect = 4e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| ||||| |||||||||||||| || || ||||||||||| | | || |
Sbjct 83321 GAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCG 83380
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || ||| |||||||| || | | ||||| || | | ||| || ||
Sbjct 83381 GCCGTCCTCAAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGGATGCCCTC 83440
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || ||||| | || | |||| ||| ||| || || |||||
Sbjct 83441 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGT 83500
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| || | ||||| ||||||| ||||||
Sbjct 83501 GATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 83539
Score = 102 bits (112), Expect = 2e-16
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || ||||| || || ||||||||||| |||| | ||||| || || || |
Sbjct 82823 CAAG-TGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAA 82881
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| || | ||| || || | | || || ||||| |||||||
Sbjct 82882 GTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTGAA 82941
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| | || | | | || || ||| ||||| |||||||| || || |
Sbjct 82942 TCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTC 83001
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| ||||| ||||||| |||||
Sbjct 83002 CAGTGAGGGTCTTGACGAAGATTTGCAT 83029
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| ||| || || || ||||| ||||| || ||||||||||| ||| | || |
Sbjct 82584 AGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGA 82643
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || ||||||||||| | ||||| || | | ||| || |||
Sbjct 82644 CCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCC 82703
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAG 152064
|| || ||||| || || || | || | ||| ||| | ||| || ||||| |
Sbjct 82704 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGA--CTCGACCTCAAGGG 82761
Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || || || ||||||||||| ||||| | ||||||
Sbjct 82762 TGATCGTCTTTCCGGTGAGAGTCTTGACGAAAATCTGCAT 82801
>seq1496
Length=1355525
Score = 109 bits (120), Expect = 1e-18
Identities = 159/225 (71%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || || || ||||| || ||||||||||| ||| | || |
Sbjct 510726 GAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 510667
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || || ||||| || | ||||||||| | | ||| || ||
Sbjct 510666 TCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTC 510607
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | |||| ||| ||| || ||||| ||
Sbjct 510606 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 510547
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
|| || || |||||||| ||||| ||||| | |||||| || ||
Sbjct 510546 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 510502
>seq1259
Length=620669
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | ||||| |||||||| || || || ||||||||
Sbjct 152364 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGCTTACCAGCGAAGATC 152423
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||| ||||||| | || || ||||| || || || || |||||| | ||
Sbjct 152424 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 152483
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| || ||| || || || || || || |||||||| || |||||||||||
Sbjct 152484 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 152542
>seq822
Length=1165972
Score = 84.2 bits (92), Expect = 5e-11
Identities = 186/274 (68%), Gaps = 4/274 (1%)
Strand=Plus/Plus
Query 115635 GCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTC 115694
||| |||||| ||||||||||||||||||| || | ||||| |||| ||
Sbjct 797015 GCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACGGTGACTGGACACTG 797074
Query 115695 TTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTT 115754
| || ||||| || |||||| || | || || ||| ||||| ||| ||||
Sbjct 797075 ATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGTGAGGAGTTCGAGGCTCTT 797134
Query 115755 TACGAAAGGTACGAGAAAGAGGG-AAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTG 115813
||||||| |||||||| ||||| ||| | | || | | | ||||| || | |||||
Sbjct 797135 TACGAAAAATACGAGAAGGAGGGCAAGGGTCGCAA-GACTATCAAGGCTCAGAAGCTTTG 797193
Query 115814 GCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGC-GTACAAAGATG 115872
| || || |||| | ||| | ||| |||| |||||| ||| ||||| ||||
Sbjct 797194 GTATGCCATTCTTGAGGCTCAGACTGAGACTGGAA-ACCCTTTCATGCTCTACAAGGATG 797252
Query 115873 CAGTTTGTCGAAAGAGCAATCAAAAGAATTTCGG 115906
| | || |||||||| |||||||| ||||
Sbjct 797253 CCTGTAACCGCAAGAGCAACCAAAAGAACCTCGG 797286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153796688390401
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |