Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq486 178 3e-39 seq1496 168 1e-36 seq1259 143 6e-29 seq1030 114 3e-20 seq588 100 6e-16 >seq486 Length=637844 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || || |||||||| |||| Sbjct 83312 ACCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGA 83371 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || ||||| ||||| || ||||||||||| || || || Sbjct 83372 GAGGGTGCGGCCGTCCTCAAGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGG 83431 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || ||| | ||||||||||| |||| || || Sbjct 83432 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAAC 83491 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 83492 CTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 83539 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | || ||| || || ||||||||||| || Sbjct 83030 ACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGC 83089 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| ||||| || || |||||||||| || || || ||| || Sbjct 83090 GAGGGTTCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGG 83149 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||||| || || | ||||| || || || | || || Sbjct 83150 GATACCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATGGTATCGGATGACTCAAC 83209 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 ||||||||||| || || || || | ||||| |||| ||| Sbjct 83210 CTCGAGAGTGATAGTTTTGCCAGTGAGTGTCTTGACGACTAT 83251 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || ||| || |||||||||||||| | Sbjct 82802 ACCACCACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGA 82861 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| ||||| || || || ||||| | || ||||| || || Sbjct 82862 AAGAGTTCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGG 82921 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||||||| ||| ||||| || || |||| || || || || | |||| Sbjct 82922 AATACCCTCCTTGTCTTGAATC-TTGCTCTTCACATTATCAATGGTATCGGATGACTCGA 82980 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 82981 CTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 83029 Score = 136 bits (150), Expect = 8e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| || ||||| ||||| || || || || || || ||| Sbjct 82611 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAG 82670 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGT 283027 || | |||||| || ||| || |||||||||||||| || ||| ||||| || ||| | Sbjct 82671 ATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATC-TTGCTCTTCACGTT 82729 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||||||||| | ||||| || || ||||||||||| || || | |||||| || Sbjct 82730 GTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTTCCGGTGAGAGTCTTGAC 82789 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 82790 GAAAATCTGCAT 82801 >seq1496 Length=1355525 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| Sbjct 510735 ACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 510676 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || |||||||| | || || |||||| || Sbjct 510675 CAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 510616 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 510615 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 510556 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 510555 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 510505 >seq1259 Length=620669 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || |||||||| || || || || || || |||||| Sbjct 152364 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGCTTACCAGCGAAGATC 152423 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || |||||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 152424 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 152483 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 152484 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 152542 >seq1030 Length=250146 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 ||| ||||||||||| |||| |||||| ||| ||||| || ||||| || |||||| | Sbjct 124031 CTTCTCGGCATGAATTCTGACCTCATGAAGCAGTATATTGAGTTCGTCGCCGATCGTCTC 124090 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || ||||||| || || || | | |||||||| | || |||||| Sbjct 124091 CTCGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCTAGCAACCCCTTTGACTTCATGGAG 124150 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| |||||||| ||| || || | | Sbjct 124151 AACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAG 124210 Query 230403 CCCGGTGT 230410 ||||||| Sbjct 124211 GCCGGTGT 124218 >seq588 Length=1325811 Score = 100 bits (110), Expect = 6e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 315640 AATTCGCCACTGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCC 315699 || ||| || |||| |||| | | || ||||| |||| ||||| || |||| | | Sbjct 270999 AACTCGGCAGAGTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGAC 271058 Query 315700 ATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGG 315759 | |||||||||| || ||||| | | ||||||| ||||| ||||| ||||| | || Sbjct 271059 AGGGCACCGAGAGAGTCACGGTCGAGATAGTTGGTAGGCTCGTCAAGGACGATAAGATGA 271118 Query 315760 GGTTGTTGCCATAGAGCG-GCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCC 315818 ||| | ||||| ||||| ||| ||| || ||| | || ||||||||||| || Sbjct 271119 GGTCGCTGCCA-AGAGCAAGCGGCGAGGACAGTCTTGACACGCTGGCCACCAGACAGACC 271177 Query 315819 ACGGATGCGAGAATGAG 315835 ||| |||||||| |||| Sbjct 271178 ACGCATGCGAGAGTGAG 271194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046717326094674