Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865. 1_202016-12-05] 1,631 sequences; 53,986,354 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1496 129 4e-25 seq486 123 2e-23 seq1259 100 2e-16 >seq1496 Length=1355525 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| ||| || ||| | || || Sbjct 510716 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 510657 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || ||||| ||| Sbjct 510656 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 510597 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || |||||||| Sbjct 510596 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 510537 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| ||||| || ||||| Sbjct 510536 CCCGTGAGGGTCTTGACGAAAATCTGCAT 510508 >seq486 Length=637844 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGT 44186 |||| ||| || || ||||| ||||||||||| |||| ||||| || |||| | Sbjct 82821 ACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTT--CGGCCGTCCT 82878 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || || ||||| | ||||| ||||| | ||| | ||| ||||| || Sbjct 82879 CAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTT 82938 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| |||| || || || |||| ||||| |||| Sbjct 82939 GAATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCT 82998 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||||||| |||||||||||||| Sbjct 82999 TTCCAGTGAGGGTCTTGACGAAGATTTGCAT 83029 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| || ||||||||||| | ||| ||| |||| || Sbjct 83331 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCA 83390 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||| || |||||||| |||||||| | || | || ||||| ||| Sbjct 83391 AGCTGTTTGCCGGCGAAAATCAAACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGA 83450 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||||| || || ||||| | || || ||||| Sbjct 83451 ATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTG 83510 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || | |||||| |||||||| ||||||||| Sbjct 83511 CCGGTCAAGGTCTTGACGAAGATCTGCATGATG 83543 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| ||| || ||| | || ||| Sbjct 82593 ACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCC 82652 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||| |||||||| | || | ||| ||||| ||| Sbjct 82653 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGA 82712 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| ||| || ||||| | || ||||||||| Sbjct 82713 ATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATCGTCTTT 82772 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| || ||||| Sbjct 82773 CCGGTGAGAGTCTTGACGAAAATCTGCAT 82801 Score = 105 bits (116), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||| || |||||||| |||||||| || |||| || Sbjct 83049 ACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCA 83108 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||| ||||||||||| | ||| | ||| ||||| ||| Sbjct 83109 AGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 83168 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| || || ||||| | || || || | Sbjct 83169 ATCTTTGACTTGACATTGT--CGATGGTATCGGATGACTCAACCTCGAGAGTGATAGTTT 83226 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || ||||| ||||| |||| Sbjct 83227 TGCCAGTGAGTGTCTTGACGA 83247 >seq1259 Length=620669 Score = 100 bits (110), Expect = 2e-16 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| || || |||| Sbjct 152362 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCTTCGAGCTGCTTACCAGCGAAGA 152421 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||| || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 152422 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 152481 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 152482 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 152539 Query 44326 GAA 44328 ||| Sbjct 152540 GAA 152542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983244178327