Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F001888865.
1_202016-12-05] 1,631 sequences; 53,986,354 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq486 158 3e-33
seq1496 156 1e-32
seq1259 149 2e-30
seq822 84.2 5e-11
>seq486
Length=637844
Score = 158 bits (174), Expect = 3e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || |||||||| ||||| ||||||||||| ||||| || | |||
Sbjct 82798 CAGATTTTCGTCAAGACTCTCACCGGAAAGACGATCACCCTTGAGGTCGAGTCCAGTGAC 82739
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| || || ||||| || || ||||||
Sbjct 82738 ACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAGCAA 82679
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || || ||||| |||||||| | || || ||| || ||| ||
Sbjct 82678 CGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 82619
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || || ||||| || || || ||| | ||||
Sbjct 82618 CAGAAGGAGTCAACTCTCCACCTCGTTCTCCGACT 82584
Score = 125 bits (138), Expect = 2e-23
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || ||||| |||||||| || || |||
Sbjct 83536 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCCGAC 83477
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| |||||||||||||| || || ||||| || || ||||||
Sbjct 83476 ACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAGCAA 83417
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || |||||||| |||||||| || || || | || || | ||||| ||| |
Sbjct 83416 CGTTTGATTTTCGCCGGCAAACAGCTTGAGGACGGCCGCACCCTCTCTGATTACAACATT 83357
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || || || ||||||
Sbjct 83356 CAGAAGGAGTCTACTCTTCACCTTGTT 83330
>seq1496
Length=1355525
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 510511 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 510570
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 510571 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 510630
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || |||||||| |||||| | || || ||| || ||| ||
Sbjct 510631 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTACAACATC 510690
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 510691 CAGAAGGAGTCCACCCTCCACCTGGT 510716
>seq1259
Length=620669
Score = 149 bits (164), Expect = 2e-30
Identities = 141/180 (78%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || ||| ||||||||
Sbjct 152543 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 152484
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || || |||||||| || |||||
Sbjct 152483 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 152424
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || |||||||||||||| | ||||| |||| || ||| |||| ||
Sbjct 152423 GATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 152364
>seq822
Length=1165972
Score = 84.2 bits (92), Expect = 5e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187
||| || |||||||| |||||| | |||||| ||||| |||||||| ||||
Sbjct 797281 GTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGT 797222
Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247
||| ||||| |||||||| || ||| || | || ||||| | ||| | |
Sbjct 797221 CTCAGTCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTGC-GAC 797163
Query 214248 TCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306
||| ||||| || ||||| ||||| ||||||| ||| || ||| ||||||| ||
Sbjct 797162 CCTTGCCCTCCTTCTCGTATTTTTCGTAAAGAGCCTCGAACTCCTCACCGTAGCAGTCGG 797103
Query 214307 CAAGACCGGGAGCCTCGTTGGGGCA 214331
| || || || ||||||||||||
Sbjct 797102 CGAGGCCAGGGCACTCGTTGGGGCA 797078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203706045403414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |