Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1143 251 7e-62 seq899 152 5e-32 seq938 123 3e-23 seq80 120 3e-22 >seq1143 Length=270876 Score = 251 bits (278), Expect = 7e-62 Identities = 547/809 (68%), Gaps = 16/809 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 158922 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 158863 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | |||||| | ||| ||| | | | |||| ||| || Sbjct 158862 TCCAAGGATCTCCAT-GACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTC 158804 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || |||||||| || || || || ||||||||||| || |||||||| Sbjct 158803 TCACATCCTTGCTTTTTTCGCTGCTTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 158744 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 158743 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 158684 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || ||||| ||||| ||| | | || | Sbjct 158683 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGC 158624 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | | | | |||||||| ||||| || || ||| || | |||||| Sbjct 158623 CCA--GCGAACCTACCTCTTT--AACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 158568 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| | || |||||| | | || || |||| | | |||| || || | Sbjct 158567 CCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 158508 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | ||||| || || ||||| ||||||| || |||||| | || || ||||||| Sbjct 158507 CTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCA 158448 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||| ||||| ||| ||||||||||||||| | || |||| Sbjct 158447 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 158388 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || ||||||||||| | || | || | | || | ||| | Sbjct 158387 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGC 158328 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | || ||| ||| | || || || ||| | || |||||| |||||||| || | Sbjct 158327 AGATGATCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGG 158268 Query 117288 CGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | | | || |||| || || || | || | || ||| ||| ||||| |||||| Sbjct 158267 CTCTTCCCTGTGC-CCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTC 158209 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| || | || || ||| ||| | | || ||| ||||| | ||||||| Sbjct 158208 GTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCC 158149 Query 117407 CTGGACTTTATGAACCTCATCT-CCTTGG 117434 | ||||| ||| | ||||| |||||| Sbjct 158148 TTCGACTTCATGGAGAACATCTCCCTTGG 158120 >seq899 Length=535284 Score = 152 bits (168), Expect = 5e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 361988 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 361929 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 361928 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 361870 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 361869 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 361810 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| |||| || || || || Sbjct 361809 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 361777 >seq938 Length=494683 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 9385 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 9326 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || ||||| Sbjct 9325 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 9266 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || || ||| ||||||||||||||||||| Sbjct 9265 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 9206 Query 40879 G 40879 | Sbjct 9205 G 9205 >seq80 Length=2348490 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| || || | || Sbjct 190377 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 190318 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| |||||||| ||| | |||||| Sbjct 190317 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 190258 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||| ||||| || |||| ||||| ||| || |||||| Sbjct 190257 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 190198 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| |||| || || || || Sbjct 190197 ATTCAGAAGGAGTCCACTCTTCACCTTGT 190169 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || |||||| ||| Sbjct 189639 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 189580 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| || ||| | || || Sbjct 189579 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 189521 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| || || ||| |||| || | |||||| | | ||||||||| Sbjct 189520 ACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAA 189461 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 189460 CATCCAGAAGGAGTCAACTCTTCACCTCGT 189431 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| ||||| |||||||| | || ||||| | |||| | | Sbjct 190089 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 190030 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | | ||| ||| |||| ||||| ||||||||||| | |||||||| || Sbjct 190029 ATCGACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGC 189970 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || |||| || || || || || || || | || ||||| |||||||||||| ||| Sbjct 189969 CTGATCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAG 189910 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 ||||| | || || ||||| || Sbjct 189909 AAGGAATCTACCCTTCATCTCGT 189887 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | || ||||| | || Sbjct 189867 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 189808 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||| || || | || || Sbjct 189807 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 189748 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| ||||| || || || || | || || || |||||||||| Sbjct 189747 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACAAC 189688 Query 40870 ATCCAGAAGGA 40880 || |||||||| Sbjct 189687 ATTCAGAAGGA 189677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208084145760