Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq899 134 1e-26 seq80 125 6e-24 seq938 109 5e-19 >seq899 Length=535284 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 361777 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 361836 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| |||||||| || || || |||||||||||||| Sbjct 361837 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 361896 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | ||| || Sbjct 361897 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 361956 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 361957 CCCGTGAGGGTCTTGACGAAAATCTGCAT 361985 >seq80 Length=2348490 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||||||| ||||| ||| || | ||| || ||| Sbjct 189443 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCA 189502 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||| ||||| || || || ||||||||||| ||| || || Sbjct 189503 GCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTC 189562 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| || |||||||| | ||| | || || ||||| ||||| Sbjct 189563 ACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTC 189622 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 189623 TTCACAAAAATCTGCAT 189639 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||||||||| | |||||| ||||| ||||| || || Sbjct 190181 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 190240 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | || ||||| ||||| || |||||||||||||| ||| || || Sbjct 190241 GCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 190300 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||| ||||||| ||| | || |||||||||| || Sbjct 190301 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 190360 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 190361 TTGACGAAGATCTGCATG 190378 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||||| || || ||||||||||| ||| | ||| || ||| || Sbjct 189659 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCA 189718 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || |||||| ||||||| ||||| ||||||||||| || ||||||||||| Sbjct 189719 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTC 189774 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || ||||||||||| ||| | || || ||| ||||| || |||||| Sbjct 189899 GTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCA 189958 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || |||||||| || ||||| |||||||||||||| ||| ||| ||| Sbjct 189959 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTA 190018 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||||||||| | || | || ||||| || || || Sbjct 190019 ACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTC 190078 Query 118722 TTTAC 118726 || || Sbjct 190079 TTGAC 190083 >seq938 Length=494683 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||| || |||||||||||| || |||||| |||| Sbjct 9207 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 9266 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || || || || |||||||||||||| || || || || | ||| Sbjct 9267 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 9326 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||||||||||| ||| | || ||||| ||||| || || || ||| Sbjct 9327 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 9386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821274106392