Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq646 293 2e-74 seq1143 145 7e-30 seq80 114 1e-20 seq899 107 2e-18 >seq646 Length=572675 Score = 293 bits (324), Expect = 2e-74 Identities = 639/954 (67%), Gaps = 2/954 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || |||||||| || |||||| | |||||| || || Sbjct 172837 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCAC 172896 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || || ||||| | |||| Sbjct 172897 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 172956 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 172957 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGT 173016 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | | ||| || ||| ||| || | ||||||||||| ||||| || Sbjct 173017 TTCTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 173075 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || | ||||| |||||||| ||||| || | | | || ||||| || | Sbjct 173076 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGT 173135 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || |||||||| || |||| |||||||| || ||||| || ||| ||| Sbjct 173136 CCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAA 173195 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || || ||||| || ||||||||||| ||| |||||| | ||| | || || || Sbjct 173196 AAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 173255 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 || || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| || Sbjct 173256 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 173315 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| || || || ||||||||| | || | ||||| || || | |||||| || Sbjct 173316 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 173375 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || || | | || || | || || | ||| |||| | ||| Sbjct 173376 TGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 173435 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| || || || ||||| |||||||| ||||| Sbjct 173436 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 173495 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 || ||||| || || | | |||||||| || || |||| ||| | | || || | Sbjct 173496 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 173555 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 ||| ||| || || || ||| || || ||| || | ||||| || ||||| || Sbjct 173556 GGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGT 173615 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | || || || || || ||||| | | || ||||| ||||||| Sbjct 173616 CTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTG 173675 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 ||||| | |||||| | |||| ||| |||| || ||||| || | || || || Sbjct 173676 CTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTT 173735 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || ||||| || | || | || || || || | || ||||| || | ||| Sbjct 173736 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 173789 >seq1143 Length=270876 Score = 145 bits (160), Expect = 7e-30 Identities = 463/708 (65%), Gaps = 20/708 (3%) Strand=Plus/Minus Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755 || |||||||| || || ||||||||||| |||||||| | ||||| |||| Sbjct 158793 GCTTTTTTCGCTGCTTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 158734 Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 || || || | | ||||| | ||||| ||||| || || | || || ||| | Sbjct 158733 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 158674 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG-AAACG 57874 || || || | || || || ||||| || || ||| | ||||| || | || ||| Sbjct 158673 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 158614 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 || || || ||||| || || || || ||| ||| |||||||| || ||| | || Sbjct 158613 TA-CCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 158555 Query 57935 CAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGC 57991 | |||||| | | | || || | || ||| || | || | || ||||| || Sbjct 158554 CCGATGGATCCA---GGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTGC 158498 Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051 || || ||||| ||||| || ||| || | || || ||| | ||||| || || Sbjct 158497 TGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGG 158438 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 || |||||||| ||||| || ||||||| | || || || || |||||||| || || Sbjct 158437 TCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACAC 158378 Query 58112 TGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACCGACGCGGGATCGCA 58167 ||| ||||| ||||| | |||||||| | ||| | | | || ||| | Sbjct 158377 TGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGC-AAGC-AGAT--GA 158322 Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227 || ||| || || || || || ||| |||| || | ||||| |||| || || || | Sbjct 158321 TCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTC 158262 Query 58228 CGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287 | ||| | ||||| |||||| ||| | ||| ||||||||||||| || || | Sbjct 158261 CCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 158202 Query 58288 ACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGA 58345 | | || | ||| || | |||| || |||||| | | || || || || Sbjct 158201 ATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGT--TTACAAGGCCACCAACCCCTTCGA 158144 Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || ||| | ||||| || | |||||||| ||||| ||||| || Sbjct 158143 CTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAA 158096 >seq80 Length=2348490 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || |||||| |||| ||||| | || Sbjct 190378 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 190319 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 190318 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 190259 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || ||||| ||||| ||| | || ||| ||| | ||||| || Sbjct 190258 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 190199 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || |||||||| || || || Sbjct 190198 CATTCAGAAGGAGTCCACTCTTCACCTTGTTCT 190166 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || || || |||||| | || || ||| | Sbjct 189639 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 189580 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || | || ||||||||| || | || || || || Sbjct 189579 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAA 189520 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||||||||||| | || ||||||| || ||| Sbjct 189519 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 189460 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || || || |||||||| || || || |||| Sbjct 189459 ATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 189422 >seq899 Length=535284 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 361988 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 361929 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 361928 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 361869 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||||| || || || |||||||| ||| | || || | | | || ||||||| || Sbjct 361868 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA-TGGACGCACCCTGAGCGACTA 361810 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 361809 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 361774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756782589920