Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085.
1_202017-07-27] 1,726 sequences; 52,309,290 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1065 109 9e-20
seq1043 104 4e-18
>seq1065
Length=341493
Score = 109 bits (120), Expect = 9e-20
Identities = 87/102 (85%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | ||||| | |||||||||||||| || |||||||||||||| |
Sbjct 325595 CGCCAAGCGTCACCGAAAGATCT-TGCGAGATAACATCCAGGGTATCACCAAGCCAGCCA 325653
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||| ||||| ||||| || ||||| ||||||||| ||||||
Sbjct 325654 TCCGACGTCTCGCTCGCCGAGGTGGTGTCAAGCGTATCTCTG 325695
Score = 89.7 bits (98), Expect = 8e-14
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | ||| |||||| ||||||| || || |||| ||| |
Sbjct 325752 TGATCTACGAGGAGACCCGCGGTGTCCTGAAGACCTTCCTCGAGGGTGTCATCCGTGACG 325811
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| ||||| || | ||| | ||||| |
Sbjct 325812 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACAGTCACATCTCTCGATGTTGTCTACG 325871
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
| |||| || |||||||| | | || ||||| || ||||| ||
Sbjct 325872 CCCTGAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAAGCT 325918
>seq1043
Length=505530
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| | | ||||| ||||| ||||||||||||||||| |||||
Sbjct 70798 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATTCAAGGAATCACCAAGCCCGCTAT 70740
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| ||||||||||| || ||||||||| | ||||
Sbjct 70739 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 70699
Score = 98.7 bits (108), Expect = 2e-16
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| ||||||| |||| |||| |||| | |||| ||||||| || || |||| || |
Sbjct 70637 TGATCTATGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGCGACG 70578
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || ||| || |||||||| || || ||||| ||||||||| | || | ||||| |
Sbjct 70577 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTGGTCTACG 70518
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || || |||| | ||||||||||| |||||
Sbjct 70517 CTCTCAAGCGCCAGGGACGTACCCTCTATGGTTTTGGTGGTTAA 70474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073621906118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |