Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq646 194 2e-44 >seq646 Length=572675 Score = 194 bits (214), Expect = 2e-44 Identities = 576/881 (65%), Gaps = 12/881 (1%) Strand=Plus/Plus Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886 |||||| || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 172911 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 172970 Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 62945 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 172971 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 173029 Query 62946 TTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCGAACTCGT 63002 | || ||| | ||| | ||| ||||| | |||| |||||||| | Sbjct 173030 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 173086 Query 63003 CTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63062 |||| | | | | || ||||| || || | || ||||||| || ||| || |||| Sbjct 173087 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGT 173146 Query 63063 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 63122 | | || || ||||| || |||||||| |||||||| || | || || || | || Sbjct 173147 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 173206 Query 63123 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182 | ||||| || || ||||| ||||| |||||| | | | |||||| | Sbjct 173207 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 173266 Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242 |||| || || | ||| ||||| | | | || || || ||||| || ||||| || | | Sbjct 173267 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 173326 Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302 | | ||| ||||| || | || | | ||| |||| || ||| || |||||||| |||| Sbjct 173327 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 173386 Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCC 63360 | || | ||||||| ||| | ||||| ||| | | || | |||| || || || Sbjct 173387 TACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACC 173444 Query 63361 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 63420 ||||| || ||||| | || || || | ||||| ||||| ||||| ||||| || Sbjct 173445 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 173504 Query 63421 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63480 ||| |||| | || | || || |||| |||| | || || || || || || Sbjct 173505 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 173564 Query 63481 TAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63540 | || ||||| || || || || |||| || | || ||||| ||||| | | Sbjct 173565 GAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 173624 Query 63541 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63600 | || ||||| ||| || || | |||||||| | |||||||||||| | Sbjct 173625 TCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCG 173684 Query 63601 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63660 || || ||||| || || || | | ||| ||| |||||||| || || ||||| Sbjct 173685 CTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAA 173744 Query 63661 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 || | |||| || || || || || | ||| | |||| Sbjct 173745 GTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 173785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618329389600