Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq646 244 1e-59 seq832 107 2e-18 seq1143 86.0 7e-12 seq823 86.0 7e-12 >seq646 Length=572675 Score = 244 bits (270), Expect = 1e-59 Identities = 1026/1599 (64%), Gaps = 57/1599 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| ||||| ||| |||||||| ||||| | | || Sbjct 172050 GTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGA---- 172105 Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 ||| ||| | | ||||| || ||||| |||| | ||||| ||| | || |||| Sbjct 172106 CTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGT 172165 Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672 ||||| ||||| || ||| |||| | | || | | |||||| | | | Sbjct 172166 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 172222 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729 |||| ||||| | | | || | ||| || || | ||||| || || | Sbjct 172223 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 172279 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 ||||||| || ||||| |||||||||| | |||||||| ||||| ||||| |||| Sbjct 172280 CACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 172339 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||| || || || | || || || ||||| ||||| | ||| |||||||| |||| Sbjct 172340 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 172399 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909 || | ||||| || ||| || | | ||||| || | | || | Sbjct 172400 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------G 172453 Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969 || | | |||||| || || || | |||||||| || || ||||| ||||| Sbjct 172454 GCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGG 172513 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028 | ||| | ||||| ||| |||| || | | | || | | || || || || || Sbjct 172514 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAA 172572 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085 || ||||| || || || || |||| |||| ||| | |||||||| | Sbjct 172573 ATGGTCTCGAAGATCTGC---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 172629 Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | || || || || |||| || || ||||||||||| ||||||||||| || || Sbjct 172630 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 172688 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 ||||||| | ||||| | || ||||| ||| ||||||| | || || Sbjct 172689 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 172748 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 || | ||| || ||| | || | || | | | ||| | | | || Sbjct 172749 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA-GCAAGCCTCAT 172807 Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323 | || |||| | ||| ||||| | ||| ||||| ||||| |||| |||||| Sbjct 172808 CGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 172867 Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383 | | ||| || | |||||| || |||| |||||| || ||| ||| | ||||| Sbjct 172868 GGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 172927 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 | || || ||| |||||| |||||||| ||||||||| ||||| | || || || | Sbjct 172928 TTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 172987 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAG 110501 |||| | || |||||||| | ||| | | || || ||| |||| | | Sbjct 172988 TCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG--ACCCTT 173045 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 || |||| ||||||||| ||||| |||| || |||| |||||| || | || Sbjct 173046 GCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAG 173105 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 || || || ||| || | || | ||| | || || ||||| | |||||| Sbjct 173106 GCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCAT 173165 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||| || ||||| ||||| | || ||||||||||||| ||| |||| || | ||| Sbjct 173166 GAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACC 173225 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG-- 110739 ||||| || || || | || || | || ||| |||||||| || ||||| ||| Sbjct 173226 GTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGAT 173285 Query 110740 ----ACAGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795 | ||| || || ||| | | || |||||| |||||||| || ||| || Sbjct 173286 GGCAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTT 173342 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855 |||||| | |||||||||| || || | ||| ||| || ||||| || ||| Sbjct 173343 GAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGA 173402 Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915 | | ||||| || ||| | | || |||||||||||| ||| ||| || Sbjct 173403 GCCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 173462 Query 110916 TGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 ||||| ||| |||| ||| | || || || ||||| || |||| | ||| | Sbjct 173463 GGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCA 173521 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 |||||||| |||| || || |||| || || || |||||||| || || | |||| Sbjct 173522 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCAT 173581 Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 | ||| ||| ||| ||||||| ||||||||| || Sbjct 173582 GTGTGA--AGAATTTGCTGGACATCAGGTTGTATGTCTC 173618 >seq832 Length=550931 Score = 107 bits (118), Expect = 2e-18 Identities = 251/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 285266 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 285324 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | || |||| | | | | | || |||||||||||||| ||||| | Sbjct 285325 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 285384 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | |||||| | || | Sbjct 285385 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGCGAAGGACCGA 285444 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || | ||||||| ||| || || ||| Sbjct 285445 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 285502 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || |||| || || | |||||||| |||||||| | |||||| | | Sbjct 285503 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 285562 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||||||||| || | || | ||| |||| ||| ||||| Sbjct 285563 AGCACCTCGAGGGATCTTGGCACCTAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 285619 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 285620 GCTCACAAACTCC 285632 >seq1143 Length=270876 Score = 86.0 bits (94), Expect = 7e-12 Identities = 206/303 (68%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||||||||| || |||| || || Sbjct 158368 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 158427 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | || ||| |||||||| Sbjct 158428 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 158487 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| ||| |||||||| | ||||||| || ||||| ||| ||| || || Sbjct 158488 ACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGC-AAAGGAGGAGTCCTTATCCTGGA 158546 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGC-TTC 119728 ||| || ||||||| |||||| | || |||||||||| || | ||||| || Sbjct 158547 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTA 158605 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 | | || | ||| | || ||||| || || | |||||||| |||||||| Sbjct 158606 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 158664 Query 119789 CTC 119791 ||| Sbjct 158665 CTC 158667 >seq823 Length=1579708 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539 |||| || | || ||||| |||||| | ||| ||||| | || || || || | Sbjct 35051 ATGGACGCATTGCCCCTCGGTCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 35110 Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599 | ||||||||| | ||||| || | ||||| ||| | |||||||| ||| || Sbjct 35111 GTGTCATCGATGCCGATTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 35170 Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651 ||||||||||| ||| |||| || ||||| || ||||||||||| || || Sbjct 35171 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAGCTTGTTCTGGAGCG 35222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588963292842800