Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq80 114 1e-20 >seq80 Length=2348490 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||||||||| || || || ||||| ||||| | |||| | |||| || | ||| Sbjct 189892 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTG 189951 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| ||||| || || || || ||||| || || || ||||| || Sbjct 189952 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTT 190011 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | || || |||| || || |||||||||| || ||||| || Sbjct 190012 TGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 190071 Query 101446 TAAAGTTTTTACAAATAT 101463 | || || || | ||| Sbjct 190072 GAGGGTCTTGACGACTAT 190089 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||| ||| | || | |||| ||||| ||| Sbjct 189437 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGC 189496 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || || | |||||||||||| || ||||| || || || || ||||| || Sbjct 189497 TTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTG 189556 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||||| | ||| || ||||| |||| || || ||||| Sbjct 189557 CTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCGGTG 189616 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 189617 AGAGTCTTCACAAAAATCTGCAT 189639 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || |||||||| || || || ||||| |||| | ||||| | | Sbjct 189652 ACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCC 189711 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || || | |||||||||||||| ||||| || || || Sbjct 189712 ATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTT 189771 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | || ||||| ||||| | Sbjct 189772 GTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAAT 189831 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || || || || ||||| Sbjct 189832 GGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 189867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270064036182