Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085.
1_202017-07-27] 1,726 sequences; 52,309,290 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1372 132 6e-25
seq646 127 2e-23
seq1143 120 4e-21
>seq1372
Length=1423154
Score = 132 bits (146), Expect = 6e-25
Identities = 96/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||||||||||||||||||||| || ||| | || |||||| |||| || |||||||
Sbjct 85848 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 85789
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| ||||| |||||||||||||| || ||||| | | |||
Sbjct 85788 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAGACTTTCAACATTACGAACG 85738
>seq646
Length=572675
Score = 127 bits (140), Expect = 2e-23
Identities = 183/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| ||||| || |||| ||| ||||| || ||||| || || | ||||| ||
Sbjct 173316 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 173375
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | |||| ||| | || || | |||| || | ||
Sbjct 173376 TGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 173435
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| ||||||||| | || || ||||| || |||||||| |||||
Sbjct 173436 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 173495
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| |||| ||||||| || || | ||||| || || ||| || || | |||||
Sbjct 173496 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 173555
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
||||||||||||||||||
Sbjct 173556 GGCGTTGAAGAGCGTGGG 173573
>seq1143
Length=270876
Score = 120 bits (132), Expect = 4e-21
Identities = 201/286 (70%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||| | |||||| |||| || ||||||||||| || |||||
Sbjct 158386 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 158445
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||| | | ||| || ||| ||||| ||||| || || || ||
Sbjct 158446 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 158505
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| | ||| |||| |||||||| | || | ||| | | |||||| || |||||
Sbjct 158506 AGCAACGAGACGCTGGGCAAAGGAG--GA-GTCCTTATCCTGGATCCATCGGATGGCCCA 158562
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTT 869417
||||||||| || | | | || | || || |||||| |||||||| ||| | |
Sbjct 158563 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTC-GCT 158621
Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
||| || ||||||| |||||||| || || || || ||||||||
Sbjct 158622 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 158667
Score = 100 bits (110), Expect = 3e-15
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| |||||| |||||||||||||| | || |||||
Sbjct 158072 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 158131
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| || |||| |
Sbjct 158132 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA 158191
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| ||||| |||||||| ||||||| | | |||||||||||
Sbjct 158192 AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGA 158251
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
|| || || || | ||| | | ||||| | ||| ||| |||||| ||
Sbjct 158252 AGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATC 158304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106997556357142
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |