Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1143 154 2e-31 seq646 127 3e-23 seq1372 114 2e-19 seq964 98.7 2e-14 >seq1143 Length=270876 Score = 154 bits (170), Expect = 2e-31 Identities = 233/328 (71%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| || ||||||||||| || ||||| Sbjct 158386 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 158445 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| || ||| ||||| ||||| || || || || Sbjct 158446 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 158505 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||||| |||| |||||| | | | ||| | | |||||| || ||||| Sbjct 158506 AGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCCCA 158562 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || ||||| || | | |||| | || || |||||| |||||||| ||| | || Sbjct 158563 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCG-CT 158621 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | || ||||||| ||||||||| ||||| || ||||||||||| ||||||||||| | Sbjct 158622 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCT 158681 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||||||| || ||||| Sbjct 158682 CCATCATGATCTGGAAGCCGTAGAAGCA 158709 Score = 118 bits (130), Expect = 2e-20 Identities = 181/257 (70%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 158065 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 158124 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||||| | | ||| ||||||| || || Sbjct 158125 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAG 158184 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 || |||| || || || |||||||| ||||||||||| ||||||| | | |||||| Sbjct 158185 CGCGACAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCAT 158244 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||| || || ||| || | ||| ||| ||||| | ||| ||| |||||| || Sbjct 158245 GCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATC 158304 Query 794132 GATGATGATCTGCCTGG 794148 | ||||| | ||||| Sbjct 158305 AGTAATGATAT-CCTGG 158320 >seq646 Length=572675 Score = 127 bits (140), Expect = 3e-23 Identities = 183/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| ||||| || ||||| || |||| ||||| || Sbjct 173316 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 173375 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | |||| ||| | || || | |||| || | || Sbjct 173376 TGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 173435 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 173436 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 173495 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | ||||| Sbjct 173496 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 173555 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| |||||||||||||| Sbjct 173556 GGCGTTGAAGAGCGTGGG 173573 >seq1372 Length=1423154 Score = 114 bits (126), Expect = 2e-19 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || ||| | || |||||||| || || ||| | | Sbjct 85848 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 85789 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| ||||| || ||||||||||| || ||||| | | ||| Sbjct 85788 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAGACTTTCAACATTACGAACG 85738 Score = 86.0 bits (94), Expect = 1e-10 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 || ||||| || | | ||||||||||| |||||| || | || |||| || ||||| Sbjct 1145062 GGGCGCCATAAACTTGTTATCCTCGATGAAGCCGACAGCATGACTTCGGGTGCTCAGCAA 1145003 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 ||||| || || ||||| | ||| ||||||| || || || || | ||||||||| Sbjct 1145002 GCCCTTAGACGAACTATGGAGATCTACTCCAACACTACACGATTCGCTTTTGCCTGCAAC 1144943 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATC 2019368 ||| | | |||||||| ||||||| || ||||||||| Sbjct 1144942 CAGTCCAACAAGATCATCGAACCCCTCCAATCACGATGCGCCATC 1144898 >seq964 Length=42953 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 21886 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 21945 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | ||||||||||| |||| Sbjct 21946 GATGAGGCGGACAGAAGTCTGGATCTCTCGGG 21977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916062797507714