Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq646 251 7e-62 seq899 140 3e-28 seq80 127 2e-24 seq938 104 2e-17 >seq646 Length=572675 Score = 251 bits (278), Expect = 7e-62 Identities = 1014/1570 (65%), Gaps = 49/1570 (3%) Strand=Plus/Plus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | | || || ||||| ||||| || ||||| || || Sbjct 172237 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 172296 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | |||| || | || || || ||||||||||||||| |||||| | | Sbjct 172297 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 172356 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | ||||| ||| || | ||| | | | || Sbjct 172357 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTG-TGTCTTGAC 172415 Query 148413 TTGCGCT-TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 || | || |||| | ||||||||||||| || || | ||||||||||||||| | Sbjct 172416 TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATGTCGAA 172475 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||| || || || |||||| || | | | | | ||| || || | | || Sbjct 172476 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 172535 Query 148532 CGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | ||| | || ||| || ||| |||||| |||||| || ||| ||| Sbjct 172536 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 172594 Query 148591 TGAGC---AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||| | ||| || | | ||| | ||||| ||||| | || || |||| Sbjct 172595 TGAGCTCACGAGCC-TCGGGTGAC--TCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGG 172651 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 |||||||||| || || | |||||||| ||||| ||||| | ||| || || Sbjct 172652 CAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCT 172711 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || || |||||||| ||||||||||||| || ||||| | || |||| | | Sbjct 172712 GGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGA 172771 Query 148768 TTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TA--CGATGCATCGGTTCACGG 148821 || ||| | | || ||||| | | ||||| || |||| | | || | Sbjct 172772 CCTTGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAG 172831 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 | | |||||| || ||||| || || ||| || ||||| | |||||| | || || | Sbjct 172832 CCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAG 172891 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 |||||| ||| || | ||| || | ||||||||| |||||||||| |||||| | Sbjct 172892 TGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGG 172951 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACC 148998 | |||||||| |||||| | || || || || ||| | || | || | ||| Sbjct 172952 CATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACC 173011 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA-- 149050 | || | ||| || |||| | || | |||| ||||||| |||||| Sbjct 173012 AA---AGTTTCTGAGC-----CTTGATAGTC-TTGCGACCCTTGCCCTCCTTCTCGTACT 173062 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 | ||| | ||| ||||||| |||| |||||||| ||| |||| || ||||||| || Sbjct 173063 TTTCGTACAGAGC--CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTT 173120 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 |||||||| |||| ||| |||||| | | || |||||||| || ||||| || | Sbjct 173121 GGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGAT 173180 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 ||| || ||| | ||||| || || | || || || ||| || || Sbjct 173181 CCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAG 173240 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 173241 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 173300 Query 149291 GCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 ||| ||||| ||||||||||| | ||| | ||||||| || || |||| |||||| Sbjct 173301 TCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 173360 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTA-GAGCTA-ATGCGACTGCCGCGCGCTCGCACT 149405 ||| || | | || ||||| ||| || | || || ||| || || | Sbjct 173361 AACAACACCGTTCGATGTACCGTTGGTACCGGCGATATAGGA--GCCAGTAGCACGGATA 173418 Query 149406 TTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAG 149464 ||||||||| | || || || || ||| | ||| ||||| || ||| ||| Sbjct 173419 CGGTGCACGTTCAGACCAATACCACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAG 173477 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 || |||||| ||||| || |||||| |||||| | || ||||| || ||| Sbjct 173478 AGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAA 173537 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-CT 149583 ||| || | | |||||||| ||| | ||||| ||| ||||| || |||| || Sbjct 173538 TTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCT 173597 Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 || ||||| | ||| | ||| | || || || || ||||| || || || | | Sbjct 173598 GG-ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAG 173656 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703 || ||||| | ||| ||||| || ||||| | | || |||| ||||| | || Sbjct 173657 ACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGT 173716 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763 | || | |||||| |||||||||| | ||| | || |||||| | | | ||| Sbjct 173717 ATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAA 173776 Query 149764 TGGCGGCGTC 149773 |||| | ||| Sbjct 173777 TGGCAGAGTC 173786 >seq899 Length=535284 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 361788 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGC 361846 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| || |||||||| |||||||| |||||| || Sbjct 361847 CAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 361906 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 361907 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 361966 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 361967 TCTTGACGAAAATCTGCAT 361985 >seq80 Length=2348490 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 190181 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 190240 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | || ||||||||||| || ||||| |||||||| ||||| |||| Sbjct 190241 GCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 190300 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || |||| ||||| ||| |||||||||| || Sbjct 190301 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 190360 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 190361 TTGACGAAGATCTGCATG 190378 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || | |||||| || Sbjct 189443 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAACTGCTTACC 189501 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||| || || || || || || |||||||| ||||| ||| Sbjct 189502 AGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTT 189561 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| ||| || || || | ||||| ||| || ||||| ||||| Sbjct 189562 CACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 189621 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 189622 CTTCACAAAAATCTGCAT 189639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| | | || | | | || ||||| | Sbjct 189892 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCA-TCTTCGAGTT 189950 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || ||||||||||| ||||||||||| |||||||| |||| Sbjct 189951 GCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCT 190010 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | || | || |||| | ||| || || | |||| ||| ||||| | Sbjct 190011 TTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAG 190070 Query 133636 TCAGAGTTTTTACGA 133650 | || || || |||| Sbjct 190071 TGAGGGTCTTGACGA 190085 >seq938 Length=494683 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || || ||||| ||||| || || ||||| |||||| Sbjct 9240 TCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 9299 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 9300 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 9359 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 9360 GTCTTGCCCGTCAGGGTCTTCACGAAA 9386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410370196240