Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1143 190 3e-42 seq646 114 2e-19 >seq1143 Length=270876 Score = 190 bits (210), Expect = 3e-42 Identities = 355/507 (70%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || | Sbjct 158923 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 158865 Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | | | ||||| ||| ||| | ||| |||| ||| || Sbjct 158864 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTC 158806 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 ||| |||| || ||||||||| || ||||| || || ||||||||| | || Sbjct 158805 TCTCACATCCTTGC-TTTTTTCGCTGCTTCTGATGGTATTGTCAACGAGAACCTCGTCGA 158747 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || | |||||||| | || ||||| |||| || ||||| ||||||||| Sbjct 158746 GCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCAT 158687 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || |||||||| || || || ||||||||| ||||||| || Sbjct 158686 GATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 158627 Query 1456071 GGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | || | ||| |||||||| |||||| || || | || | | | || |||| Sbjct 158626 CGCCCAGC-GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 158568 Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 |||||||||| || |||||| | | | || ||| | ||||||| |||| ||||| Sbjct 158567 CCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCTCGT 158510 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | || || || || ||||| ||||| ||| || ||| | | ||||| ||||| Sbjct 158509 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 158450 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| || |||||||||||||| Sbjct 158449 CAAGAAGCGTGGTCTCATGCCCGGTCT 158423 Score = 86.0 bits (94), Expect = 9e-11 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || |||||| ||| ||| | ||||| ||| ||| | || || || || ||||| Sbjct 158304 GATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGC 158245 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 |||||| | | |||||| ||||||||||| || ||||| || || || || | | Sbjct 158244 ATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCGTCTCCTTGTCG 158187 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 |||| ||| || ||||| ||| | | ||||||| ||| | |||||| ||| Sbjct 158186 CGCTTGGCAACG-AGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 158128 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGGC 1456770 || || | |||||||||||||| |||||| || | || ||| ||| |||||||| Sbjct 158127 TCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGT 158068 Query 1456771 GTC 1456773 ||| Sbjct 158067 GTC 158065 >seq646 Length=572675 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| || |||||||| || | || || || || ||||| || | || Sbjct 173573 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 173514 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 173513 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 173454 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | || ||| | || || | ||| |||| | Sbjct 173453 AAGATGGCTGGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTATATC 173394 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || ||||| |||| || |||||||| || || ||| |||| Sbjct 173393 GCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 173334 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||| ||||||||| Sbjct 173333 GCTCGCTATGTCGACCAG 173316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177644724127612