Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq80 131 2e-25 seq899 125 7e-24 >seq80 Length=2348490 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || ||||| ||||| ||||||||||| || Sbjct 190151 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 190210 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || |||||||| || ||||| ||||| || Sbjct 190211 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGA 190270 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 190271 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 190330 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| || || || ||||| || ||||| Sbjct 190331 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 190377 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || |||||||| ||||||||||||||| || Sbjct 189869 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 189928 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || ||||| || || || ||||| |||| |||||||| || || || Sbjct 189929 AGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 189988 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| ||| || || ||| | || |||||||| || || Sbjct 189989 ATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 190048 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || ||||| ||||| || || || | || || |||| Sbjct 190049 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 190085 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | |||||||| || || || ||||| || ||||||||||||| | |||| || Sbjct 189422 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 189481 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || || || || | |||||| ||||| || || || || || Sbjct 189482 CCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCC 189541 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 189542 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTG 189601 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||| || || ||||| ||||| Sbjct 189602 ATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 189639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| ||||||||||||||| || || | || || || || Sbjct 189664 GTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTG 189723 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || | ||||| |||||||| || || || || || || || || || Sbjct 189724 CTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTT 189783 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || ||||| || || || || ||||||||||| || || || Sbjct 189784 GCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGT 189843 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 189844 GAGGGTCTTGACGAAGATTTGCAT 189867 >seq899 Length=535284 Score = 125 bits (138), Expect = 7e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | || || | ||| || | || ||||| || ||||| ||||| || ||||||||| Sbjct 361753 GCCATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 361812 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 |||| | |||| | || |||||||| ||||| ||||| || | |||||||| || Sbjct 361813 TCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCA 361872 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || ||||| || || || || || || ||||| ||| | |||||||| || Sbjct 361873 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGAC 361932 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || || || || || || | || || |||||||| ||||| ||| Sbjct 361933 TCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 361989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387496029520