Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085.
1_202017-07-27] 1,726 sequences; 52,309,290 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq646 237 2e-57
seq1143 138 1e-27
>seq646
Length=572675
Score = 237 bits (262), Expect = 2e-57
Identities = 1146/1788 (64%), Gaps = 51/1788 (3%)
Strand=Plus/Plus
Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383
|||| | |||||||||| || || |||| || || || |||||||| || |||
Sbjct 171919 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 171978
Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442
||||| || | ||||| || | || | |||||| | || |||| |||||| ||
Sbjct 171979 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 172037
Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500
|| |||| || ||||| ||| |||| | ||||||||| || || | || |||
Sbjct 172038 TTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 172095
Query 110501 ATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560
|| | || ||| | | || |||||||| || ||| ||| ||||| |||
Sbjct 172096 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCG 172155
Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATA 110620
| ||||| | | || ||||| |||||||| | | | ||| | | |||||||
Sbjct 172156 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATA 172215
Query 110621 TCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACA 110680
| | |||||| ||||| || | ||||| |||| || ||||||||
Sbjct 172216 GCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGG 172275
Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740
|||||||| ||||| | || |||||||||| | ||||| || || ||||| ||
Sbjct 172276 AACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCG 172335
Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800
|| || |||| || || | ||| ||| || ||||| || || | | |||||||||
Sbjct 172336 TTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTA 172395
Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--AGCT 110855
|| | || | ||||| ||||| ||| | |||||||| || | ||
Sbjct 172396 CGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG 172452
Query 110856 TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAA 110915
|| || || |||| ||||||| ||||| || | || | || ||||| ||||| | |
Sbjct 172453 -GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGA 172510
Query 110916 AGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGA 110974
|||| |||| ||| | | | ||||| | ||| | || |||| |||||
Sbjct 172511 AGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGTGG 172569
Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034
|| ||||| || ||||| | || | ||| || || ||| || || | |
Sbjct 172570 TAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 172629
Query 111035 CGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093
|| || | || || |||| || || || |||||||| | |||||| |||| ||| ||
Sbjct 172630 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 172688
Query 111094 CATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 111153
||| ||| || || || || || || || || || |||| ||| ||
Sbjct 172689 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 172748
Query 111154 ATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGTCT 111212
|| |||||| || ||| | || || || || | | || | || || ||
Sbjct 172749 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAGCCT 172804
Query 111213 CTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269
| || | ||| | || || || | || || | ||||| ||||| ||| |
Sbjct 172805 CATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGT 172864
Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329
| | |||||| | |||||| || || | |||||| || || || || | |
Sbjct 172865 CAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGT 172924
Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389
|||||||||| ||||| |||||| |||||||||||||||||| | || | || ||||
Sbjct 172925 TCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCT 172984
Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGC 111447
| ||||| | | ||||| || | ||||| || | | | || || | || | |
Sbjct 172985 CAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGC---GAC 173041
Query 111448 CCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG 111506
|| | |||||| |||||||||| ||| || || || |||||||| || |||||
Sbjct 173042 CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGG 173101
Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCT 111566
||| || || || || || || | || | ||| | || | ||||| ||||
Sbjct 173102 CGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCT 173161
Query 111567 TCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTT 111623
|||||||||| || || ||||| ||| || |||| || || | ||| || |||| |
Sbjct 173162 TCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGGCACGGA-CCTCCT 173218
Query 111624 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683
| | ||| ||||| || | ||||||||||| | || ||| | |||||| ||||| |
Sbjct 173219 CTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGA 173278
Query 111684 GATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGG 111740
| |||| || | || || ||| ||| | || | |||||||| || |||
Sbjct 173279 GGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGT 173338
Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-AT 111798
||| || || |||||||| |||| || ||| | ||| ||| || || || ||| ||
Sbjct 173339 TGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATAT 173398
Query 111799 ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 111858
| ||| | | || | | | || | || || |||||||| |||||| ||| ||
Sbjct 173399 AGGAG--CCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGA 173456
Query 111859 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 111918
||| ||||| | | ||||| | ||||| || | || ||| ||||| | |
Sbjct 173457 GATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATC 173516
Query 111919 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 111978
| | ||||||| |||| || || || || || || |||||||| || || |
Sbjct 173517 AACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGA 173576
Query 111979 TGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 112036
|| || |||| | | || ||||||| || ||||||||||||||| || ||
Sbjct 173577 GGCATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATA 173634
Query 112037 TCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084
|| || || || || | | || ||||||| ||||| ||| |||
Sbjct 173635 TCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGG 173682
>seq1143
Length=270876
Score = 138 bits (152), Expect = 1e-27
Identities = 337/504 (67%), Gaps = 20/504 (4%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| | || |||||||| |||||||||||||| ||| ||||| ||||| |||||
Sbjct 158081 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 158140
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484
||||| || || || | || || ||| | | || || | | || |||
Sbjct 158141 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 158194
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
|||||||| | || |||||||||||| ||| ||||||||||| |||| |||
Sbjct 158195 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 158254
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
||| || || || || || |||| | | ||||||| || || || | | |||
Sbjct 158255 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATA 158314
Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661
| ||||| | | | ||| | | || | || | || ||| || ||||
Sbjct 158315 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 158371
Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721
|| || ||| ||||||||||| || || || || || || |||||| ||||| |||
Sbjct 158372 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 158431
Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781
|||||||| |||||||| | ||| | |||| | ||| | || |||||||||||||
Sbjct 158432 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 158491
Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCA 122840
|| ||| || || |||| || || | ||| |||||| ||| ||| | | | |||
Sbjct 158492 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 158550
Query 122841 TTTCATTGCCCATTTCGCCTTCTT 122864
| || ||||| | ||||||||
Sbjct 158551 TCGGATGGCCCAGTCGGCCTTCTT 158574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628018450209600
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