Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085.
1_202017-07-27] 1,726 sequences; 52,309,290 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq646 228 9e-55
>seq646
Length=572675
Score = 228 bits (252), Expect = 9e-55
Identities = 521/775 (67%), Gaps = 22/775 (3%)
Strand=Plus/Minus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| || | | ||||| ||||| || | ||| |||
Sbjct 173681 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 173622
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
||||| ||| || | ||| | || | ||| || || ||| | || || || |||
Sbjct 173621 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTTC 173562
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
||||| || || ||| || || |||| |||||| |||| | |||||||| |||
Sbjct 173561 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 173502
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|| || || |||||||| || |||||| |||||| ||||||||| | | |||
Sbjct 173501 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 173442
Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
||||| ||| | || ||| | | | ||||||| | ||| | ||| || || |
Sbjct 173441 GGTATTGGTCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTATATCGCCGGTACCA 173384
Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|||| | ||| | || | || |||||||| || |||||||||||||| || || ||
Sbjct 173383 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 173326
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| |||||||||| ||||| || | || ||||||||||||||||| |||||
Sbjct 173325 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 173266
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
| | || | | ||||| || || || ||| ||| || ||| | || ||| | ||
Sbjct 173265 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 173206
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||| || || || ||||| || || || |||||| | || || ||| |
Sbjct 173205 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 173146
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774
|| || ||| ||||||||||| ||||||||||| |||||| | | || |||||| |
Sbjct 173145 CGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGAG 173087
Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828
||||||| | | |||| | |||| | || | |||| ||| ||||
Sbjct 173086 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 173033
Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888
||||||| | | | ||| | || || || || |||| ||||| |||| |
Sbjct 173032 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 172973
Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
| | |||| |||||||||| | |||| ||||||||||| |||||| ||||
Sbjct 172972 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 172918
Score = 89.7 bits (98), Expect = 6e-13
Identities = 530/830 (64%), Gaps = 54/830 (7%)
Strand=Plus/Minus
Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186
||||| | ||| ||||||||| | ||||||| ||| ||||||| | | |||
Sbjct 172763 GTTGTTATTCGCAACCTGAACAAGATCATCGATGTGAACCACTACCCTGTCCAGGAGGCT 172704
Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATC 55246
||||| ||| | || ||||| ||||| | | ||||| |||||| | |||||
Sbjct 172703 CGCAACAGTAACATGCGCCACCGACCCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCT 172644
Query 55247 TTCATGATGCTCGGAT--TGCCCTTCGACTCGGAACCT--GCTCGAGAAATTAACCAGGA 55302
||| | ||||| | |||||||||| || | || ||||| || | ||| || |
Sbjct 172643 TTCCT--TGCTCTGCGCATGCCCTTCGAGTC--ACCCGAGGCTCGTGAGCTCAACAAGCA 172588
Query 55303 CATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTC-GTGTCATCTGGCTATGAGC 55360
|||||| || | ||| ||| || || ||| | || ||| || ||||||| |
Sbjct 172587 GATCTTCGAGAC-CATTTACCACGCTGCCCTCACTGCCTCCGTG-CAGCTGGCTAAGGAG 172530
Query 55361 GAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGAT 55420
||||| ||||| || ||| | ||| || || |||| | |||||||||||
Sbjct 172529 GAGGGTCCCTACTCCACCTTCAAAGGTTCCCCCGCCTCTGAGGGTATCCTCCAGTTCGAC 172470
Query 55421 CTATGG---GGCAAG---TCTGACCCCATG---TTTGACA-------AGTTGAAG-CATG 55463
| ||| | |||| ||||||| | | | || | || |||| || |
Sbjct 172469 ATGTGGAACGTCAAGCCCTCTGACCTCTGGGACTGGGAGACTCTTCGAGAGGAAGTCAAG 172410
Query 55464 ACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGA 55523
||| ||| ||| | || ||| |||||| | || || ||||| || || |
Sbjct 172409 ACA--CAC------GGCATCCGTAACAGTCTGCTCCTTGCTCCTATGCCTACTGCCAGTA 172358
Query 55524 CGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGC 55583
| | ||||| |||||||||||||| |||||||| ||||| |||||||||||| |
Sbjct 172357 CCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAAC 172298
Query 55584 GCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGA 55643
| || || || |||||||| | ||||| || ||||||||||
Sbjct 172297 GACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCTGGCTGCTCAAGGACCTTGTCG 172238
Query 55644 AGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTC 55698
| || |||| ||| | || |||| || || |||| ||| || ||
Sbjct 172237 ACATGGGTCTGTGGT--CCGATGCTATGAAGAACCGCATCATTGCTGAGAATGGT---TC 172183
Query 55699 CGTCCAGAA---TCTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGA 55755
| | ||||| || | || ||| | |||||| | || ||| || |||||
Sbjct 172182 CATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGTATAAGACCGTTTGGGA 172123
Query 55756 GATTCCACAGAAG--AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAG 55813
||| | ||| |||| || | ||| ||||||||| ||||| | ||| || |||
Sbjct 172122 GATCTCTCAGCGCCAAGTCG--TTCAGATGGCTGCTGATCGAGGTGCCTTCATTGATCAG 172065
Query 55814 TCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCAC 55873
|||||||| ||||||||| |||| | | || | ||| |||| | | | ||||||
Sbjct 172064 TCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAAGATCACCAGTATGCAC 172005
Query 55874 TTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923
||| || |||||| || |||||||| || |||||||| || || ||
Sbjct 172004 TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACCTTCGTAC 171955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547204193814800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |