Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq646 315 8e-81 seq80 185 1e-41 seq899 156 5e-33 seq938 123 3e-23 seq1143 118 1e-21 >seq646 Length=572675 Score = 315 bits (348), Expect = 8e-81 Identities = 1150/1767 (65%), Gaps = 69/1767 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| ||||||||| | |||| Sbjct 171949 GCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCAGCCTGCAAAGTGC 172008 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||| ||| ||| | | ||||||| | |||| ||||||||| ||||| |||||| Sbjct 172009 ATACTGGTGATCTTGCCCATCGTGGGGTCTTTCATGTGGATGTTCAGTGACTGGGACTGA 172068 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA-TTGACTTTTGTGGAATTTCCCA 80210 ||||| || || ||||| || ||||| | || | ||| | | | | || ||||| Sbjct 172069 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACTTGGCGCT-GAGAGATCTCCCA 172127 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || ||||| |||| | || | || |||| || | | | | || Sbjct 172128 AACGGTCTTATACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 172184 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||| | || |||| | || |||| || | ||| | ||| | | | || Sbjct 172185 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 172244 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 || || | || | | ||| || | || |||| || ||||| || || | Sbjct 172245 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGTCGTTG 172301 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || ||||||||| || || ||||| | || || Sbjct 172302 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACT 172361 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | | | ||| || || | |||||| |||||| ||||| Sbjct 172362 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 172421 Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || | | || | ||| | ||| | ||| |||| |||||||||| | Sbjct 172422 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCGAAC 172476 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| ||||| || || || || || ||| || ||| || |||||| ||| Sbjct 172477 TGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTA 172536 Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||||||| |||| || | ||||| ||||| |||||| ||| |||| |||||| Sbjct 172537 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTT 172595 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | | || |||| || ||||| | || || || | ||| | || || || Sbjct 172596 GAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAG 172655 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791 ||||||||| || | | || || ||||||||| |||| | | || | ||||| | | Sbjct 172656 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 172714 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| |||||||| |||||||||||| |||||||| | | || | Sbjct 172715 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCT 172774 Query 80852 CATGAAGTTTCTGAAAGTCGAATT--GGTTCCCC----TTCACAAATGCCGGAAGGCTCA 80905 || | |||| |||||| | | || | || | || | || || || Sbjct 172775 TGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCA 172834 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCG 80962 | || || || ||||| || || ||||| |||| || | ||| ||| | ||||| | Sbjct 172835 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCAATAATTTCAG 172891 Query 80963 TGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020 |||||| || || ||| || ||||| ||||| || ||||| |||| |||||| Sbjct 172892 TGCACAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 172949 Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080 || ||||||||| |||| | ||| | |||||||| ||| | || || ||||||| Sbjct 172950 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 173009 Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140 ||||| | | ||||||| |||||| ||||| || | | ||||| |||| Sbjct 173010 CCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTA 173069 Query 81141 AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 | ||||||| | |||| | ||| | | |||| | ||||||||||| ||||||| Sbjct 173070 CAGAGCCTCGAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGGCACA 173128 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 |||| ||||||| || || || ||| |||||||||| ||||||||||| |||| Sbjct 173129 TCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 173188 Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319 || ||| ||||| ||| || ||||||| | ||| ||||| || | || || | Sbjct 173189 CGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGA 173248 Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373 | || | || || | ||||| ||||| || || | ||| | | || | |||| Sbjct 173249 ACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG- 173307 Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 ||||||||||| ||| || || ||||| ||| || ||||| | |||||| | | Sbjct 173308 --TTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAA 173365 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCT 81491 ||| | || |||||| ||||| ||||| || || | || || || ||| Sbjct 173366 CACCGTTCGATGTACCGTTGGTACCGGCGATATAGGAGCCAGTAGCACGGATACGGTGCA 173425 Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 || ||||| || ||||| | | ||| || ||| ||||| || | || || Sbjct 173426 CGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 173483 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 || |||||||| || || || | ||||| |||| |||||| || ||||| || || Sbjct 173484 GTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG-GG 173542 Query 81612 GCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 ||| | |||||| ||||| || || || | || || |||| | | | |||| Sbjct 173543 GCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACA 173602 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 |||||| || || ||| ||| || ||||| ||||| |||||| | || |||| Sbjct 173603 TCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACAC 173662 Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756 |||| | ||||| ||| ||||| |||| Sbjct 173663 GCATGATCATGTGCTGAGGGCG-CTCG 173688 >seq80 Length=2348490 Score = 185 bits (204), Expect = 1e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||| ||||| |||| ||| | Sbjct 190083 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGAC 190024 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| || ||||| ||||||||||| || || Sbjct 190023 AATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGATC 189964 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||||||||| |||| || ||||| || ||||| || | || |||||| Sbjct 189963 TTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 189904 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| ||| | || || || ||||| Sbjct 189903 TCTACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 189869 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| |||||||| || || |||||| Sbjct 189867 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 189808 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||| || || |||||||||||||| |||||||| || || Sbjct 189807 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 189748 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| || |||| || || || | ||||| || Sbjct 189747 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACAAC 189688 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| ||||| || | || | |||||||| ||||| Sbjct 189687 ATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 189641 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || ||||| ||||| || || |||||||| || || || Sbjct 189639 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 189580 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| ||||| || || || Sbjct 189579 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAA 189520 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| || Sbjct 189519 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 189461 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| || || | || ||||||||||| || Sbjct 189460 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGTGGCCA 189410 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 190380 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 190321 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || ||||||||||||||||| ||||| || ||| Sbjct 190320 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGAC 190261 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | ||||| || || ||||| || ||||| | || || || | || || Sbjct 190260 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 190201 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| ||||||||||| || || | || || || ||||| Sbjct 190200 AACATTCAGAAGGAGTCCACTCTTCACCTTGTTCTCCGCCTCCGTGGTGG 190151 >seq899 Length=535284 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 361985 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 361926 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 361925 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 361866 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 361865 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGC-GACTACAA 361807 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 361806 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 361759 >seq938 Length=494683 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 9385 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 9326 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 9325 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 9266 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 9265 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 9206 Query 27595 G 27595 | Sbjct 9205 G 9205 >seq1143 Length=270876 Score = 118 bits (130), Expect = 1e-21 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | || | || || |||| |||||| Sbjct 158574 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 158515 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| ||||| || ||| || || || ||||| ||| | ||| ||||| ||| Sbjct 158514 CTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTC 158455 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| |||||| | || || |||||||| |||||||| Sbjct 158454 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 158395 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 || ||||| || ||| || ||||| Sbjct 158394 GATGAGGGTCTTCACACTGACTTTGC 158369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298095553120