Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085.
1_202017-07-27] 1,726 sequences; 52,309,290 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq80 196 1e-44
seq899 176 1e-38
seq938 138 3e-27
seq646 109 1e-18
>seq80
Length=2348490
Score = 196 bits (216), Expect = 1e-44
Identities = 178/222 (80%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952
||||||| || || ||||||||||| ||||| || |||||||| || || | ||| |||
Sbjct 189419 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAA-GGT 189477
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||| |||||| || ||||||||||| || ||||| ||||| |||| ||
Sbjct 189478 GCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACC 189537
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| |||||||| ||||| |||||| | ||| ||||| ||
Sbjct 189538 CTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAG 189597
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| ||||||||||| ||||| | ||||||
Sbjct 189598 GGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 189639
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||||||||||||||| || || ||||| ||||| | || || | || ||
Sbjct 190166 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 190225
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || | |||||| ||||| || |||| || |||||||||
Sbjct 190226 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 190285
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || ||||| ||||| || ||||||||||| ||||| |||
Sbjct 190286 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 190345
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| || || | ||||||
Sbjct 190346 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 190377
Score = 154 bits (170), Expect = 3e-32
Identities = 154/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || ||||| || || || || || ||||| || || |||||||| | ||||||
Sbjct 189884 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCT 189943
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || ||||| ||||| || ||||||||||| | || |||||||||
Sbjct 189944 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 190003
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| || || || |||||||| || || || ||||| |||||||| |||
Sbjct 190004 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 190063
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 190064 TTGCCAGTGAGGGTCTTGAC 190083
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| ||||| || || || || ||||| || || | ||| ||
Sbjct 189646 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 189705
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || |||||||| |||||||| || || ||||| || ||||||| ||
Sbjct 189706 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 189765
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| ||||| || || ||||| || || || || || ||
Sbjct 189766 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 189825
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || |||||||| ||||| ||||| || || | |||||
Sbjct 189826 AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 189867
>seq899
Length=535284
Score = 176 bits (194), Expect = 1e-38
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || ||||| | ||||||
Sbjct 361774 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 361833
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || |||||||| || | || |||||||||
Sbjct 361834 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 361893
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || || ||||| || |||||||||
Sbjct 361894 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 361953
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 361954 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 361988
>seq938
Length=494683
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | || || | ||||| || |||||||| || ||||||||
Sbjct 9207 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 9266
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || |||||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 9267 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 9326
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || ||
Sbjct 9327 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 9385
>seq646
Length=572675
Score = 109 bits (120), Expect = 1e-18
Identities = 195/280 (70%), Gaps = 10/280 (4%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||||||||||||||| | |||| |||||| ||||| ||||| || ||||
Sbjct 172923 GTTCTTTTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAGAGCATGAATGGGTTTCC 172979
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||||| || ||| | |||||| | |||||| | ||| || || ||||||
Sbjct 172980 GGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG 173039
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| || || || ||||||||||||| ||| || ||||||| ||| ||| ||| ||
Sbjct 173040 ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTC 173099
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-ACT 178327
|||| || || ||| |||||||| | || |||| | ||| |||| ||| ||
Sbjct 173100 GGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTT--TTCAACA 173157
Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
|| |||||||| || |||| | |||| | ||| |||||
Sbjct 173158 CGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAA 173197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159126366077990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |