Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq80 149 1e-30 seq938 143 6e-29 seq899 140 8e-28 seq646 113 1e-19 seq1150 107 5e-18 >seq80 Length=2348490 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| ||||| || || | ||||| |||| | ||| Sbjct 189646 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 189705 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || ||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 189706 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 189765 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| || ||||| || || | || || || | Sbjct 189766 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 189825 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || || | ||| | |||||| Sbjct 189826 AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 189867 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || ||||| ||||| || || || |||| ||||| ||| ||| || Sbjct 189419 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 189478 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | |||||| |||||||||||||| || ||||| || || |||||||| Sbjct 189479 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCC 189538 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||| ||||| ||||| || ||| || || | Sbjct 189539 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGG 189598 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||| || Sbjct 189599 GTGATGGTCTTTCCGGTGAGAGTCTT 189624 >seq938 Length=494683 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||||| ||||| || |||||||| ||||||||||| Sbjct 9207 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 9266 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 9267 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 9326 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 9327 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 9385 >seq899 Length=535284 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| ||| || || | ||||| Sbjct 361774 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 361833 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| ||||| || ||||| || || || || |||||||| Sbjct 361834 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 361893 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||||||| Sbjct 361894 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 361953 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || || | ||| | ||||| || Sbjct 361954 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 361988 >seq646 Length=572675 Score = 113 bits (124), Expect = 1e-19 Identities = 188/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 || |||||| |||| || | ||| || ||||||| ||||| || | || ||| Sbjct 172927 TTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCA 172986 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || | |||||| | |||||||| ||||| || | ||| | | |||| Sbjct 172987 GTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTG 173046 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || ||| ||||||||||||||||||| |||| || || | ||||||| ||| |||| Sbjct 173047 CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 173106 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || ||||| | || |||| || || | |||| || | ||||||| Sbjct 173107 CCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATG 173166 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 || || |||| |||||| |||| |||||| Sbjct 173167 AAAAGATCAGGGATCCAAAGGGCGAGGAAAAG 173198 >seq1150 Length=45481 Score = 107 bits (118), Expect = 5e-18 Identities = 197/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || || ||||||||||| | | || ||||| ||||| |||||| ||||| || | Sbjct 41910 ACATTGTATTTAATATTCGCTCTTTTCTCTGG-ATTATTAGGTACAGCTTTTTCAGTGTT 41968 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 || || | ||| |||| || || || |||| ||| | | ||||| ||| | | Sbjct 41969 AATTAGACTTGAACTTAG-TGGGCCAGGAGTTCAA-TAT--ATTTCTAATAATCAATTAT 42024 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | ||| | | ||||| || || || | | ||||| ||||| | |||||||| | Sbjct 42025 ATAACAGTGTAATTACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCAGCAT 42084 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || || ||||||| || | ||||||||| | |||| ||| |||||||| | Sbjct 42085 TAATAGGTGGGTTTGGAAATTTTTTAATGCCTTTAATGGTAGGTGGTCCGGATATGGCAT 42144 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | || ||||||||||| |||||| |||| ||| Sbjct 42145 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCTCCT 42185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192504827917844