Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085. 1_202017-07-27] 1,726 sequences; 52,309,290 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq899 109 1e-18 seq80 105 2e-17 seq938 93.3 1e-13 >seq899 Length=535284 Score = 109 bits (120), Expect = 1e-18 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || ||||| || ||||||||||| ||| | || | Sbjct 361767 GAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 361826 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| || | ||||||||| | | ||| || || Sbjct 361827 TCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTC 361886 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 361887 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 361946 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || || || |||||||| ||||| ||||| | |||||| || || Sbjct 361947 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 361991 >seq80 Length=2348490 Score = 105 bits (116), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| |||||||| ||||| || || ||||||||||| | | ||| | Sbjct 190159 GAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCG 190218 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || || || |||||||| || |||| | |||||||| | | || || | Sbjct 190219 GCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGT-TGCTGGTCGGGGGGAATGCCCT 190277 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || ||||| || |||||| | || | |||| ||| ||| || || || | Sbjct 190278 CCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGG 190337 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| || | ||||| ||||||| |||||| Sbjct 190338 TGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 190377 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || || |||||||| ||||| || ||||||||||| ||| || || | Sbjct 189422 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 189481 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || || ||||||||||| | ||| || || | | || || ||| Sbjct 189482 CCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCC 189541 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAG 152064 || || ||||| || || || | || | ||| ||| | || || ||||| | Sbjct 189542 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGA--TTCGACCTCAAGGG 189599 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || |||||||||||||| || | |||||| Sbjct 189600 TGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 189639 >seq938 Length=494683 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | ||||| ||||| || || || || |||||||| Sbjct 9207 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 9266 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| ||||||| | || || ||||| || || || || |||||| | || Sbjct 9267 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 9326 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| || ||| || || || || || || |||||||| || ||||||||||| Sbjct 9327 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 9385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795283974146