Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085.
1_202017-07-27] 1,726 sequences; 52,309,290 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq80 172 1e-37
seq899 168 1e-36
seq938 147 5e-30
seq1143 122 2e-22
seq1261 84.2 5e-11
>seq80
Length=2348490
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | ||| || || || |||||||| ||||
Sbjct 190150 ACCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGA 190209
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || ||||| || ||||| ||||| ||||| ||
Sbjct 190210 GAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGG 190269
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || || | ||||||||||| |||| || ||
Sbjct 190270 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAAC 190329
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 190330 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 190377
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||| | || ||| || || ||||||||||| ||
Sbjct 189868 ACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGC 189927
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || |||||||| || ||||| || || |||||||||| || || |||||| ||
Sbjct 189928 AAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 189987
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||||| || || | ||||| || || || | |||||
Sbjct 189988 GATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGAC 190047
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093
|| |||||||| ||||| || || | ||||| |||| |||
Sbjct 190048 CTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 190089
Score = 145 bits (160), Expect = 2e-29
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | || ||| || || ||||||||||| |
Sbjct 189640 ACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGA 189699
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || |||||||| || ||||| || || || ||||| | || ||||| || ||
Sbjct 189700 AAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGG 189759
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| |||||| ||||| || || |||| || || || || | ||||
Sbjct 189760 AATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTATCAATGGTATCGGATGACTCGA 189818
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| ||||| || ||||| || || | ||||| ||||| || |||||
Sbjct 189819 CTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 189867
Score = 132 bits (146), Expect = 1e-25
Identities = 170/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AGC 282931
||||| || || || || || || || | || || || |||||||||||||| |
Sbjct 189413 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 189472
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| ||||| || | || || || || ||||| | ||| ||||| ||| ||
Sbjct 189473 AAG-GTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 189531
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| || ||| ||||| || ||| | ||||||||||| | |||||
Sbjct 189532 AATACCCTCCTTGTCCTGAATC-TTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCGA 189590
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| ||||| || || | |||||| || || ||||||||
Sbjct 189591 CCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 189639
>seq899
Length=535284
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || ||||| || | ||| || || ||||||||||||||
Sbjct 361758 ACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 361817
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| || || || || |||||||| | || || |||||| ||
Sbjct 361818 CAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 361877
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 361878 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 361937
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||||||||| ||||| | ||||| ||||| |||||||| ||
Sbjct 361938 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 361988
>seq938
Length=494683
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || || ||||||||||| || || || || || ||||||
Sbjct 9207 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 9266
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || |||||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 9267 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 9326
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| |||||
Sbjct 9327 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 9385
>seq1143
Length=270876
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250
|||||||| | || ||| |||| || ||| |||||||||| |||| ||||||
Sbjct 158285 AGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGA 158226
Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310
||| || || || ||||| ||||||||| | | || ||||| || ||||||| || |
Sbjct 158225 AGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTT 158166
Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370
| || ||| |||||||||| || |||||| ||| || || || || || ||||
Sbjct 158165 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 158106
Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||||| |||||||| ||| || || | | |||||||
Sbjct 158105 TCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGT 158066
>seq1261
Length=366165
Score = 84.2 bits (92), Expect = 5e-11
Identities = 122/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726
|| ||||| |||| ||||| | |||| | || |||||||||| || || || | |
Sbjct 316012 ACACCACCCTCGAACTTCTTCAAGGCCTTGGACAGGGCACCGAGAGAGTCACGATCGAGA 316071
Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGCG-GCGCCGAT 315785
||||||| ||||| ||||| ||||| | || ||| | ||||| ||||| ||| | |
Sbjct 316072 TAGTTGGTAGGCTCGTCAAGGACGATAAGATGAGGTCGCTGCCA-AGAGCAAGCGGCAAG 316130
Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835
|| ||| | || ||||||||||| ||||| |||||||| ||||
Sbjct 316131 GACAGTCTTGACACGCTGACCACCAGACAGACCACGCATGCGAGAGTGAG 316180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046716052016804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |