Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20melongenae_20[genbank_20GCA_5F002234085.
1_202017-07-27] 1,726 sequences; 52,309,290 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq899 129 4e-25
seq80 125 5e-24
seq938 100 2e-16
>seq899
Length=535284
Score = 129 bits (142), Expect = 4e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| |||||| ||||||||||| ||| || ||| | || ||
Sbjct 361777 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 361836
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||| | |||||||| || | || | || ||||| |||
Sbjct 361837 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 361896
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||||| || |||||||| | || ||||||||
Sbjct 361897 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 361956
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||||||||| ||||| || |||||
Sbjct 361957 CCCGTGAGGGTCTTGACGAAAATCTGCAT 361985
>seq80
Length=2348490
Score = 125 bits (138), Expect = 5e-24
Identities = 158/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| ||| |||||| || ||||||||||| | ||| ||| |||| ||
Sbjct 190169 ACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCA 190228
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || ||||| || ||||| || | || | || ||||| |||
Sbjct 190229 AGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 190288
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | || ||||||| || || ||||| | || || ||||
Sbjct 190289 ATCTTGGACTTGACATTGT--CGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 190346
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
| || || | |||||| |||||||| |||||||||
Sbjct 190347 TGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 190381
Score = 118 bits (130), Expect = 8e-22
Identities = 155/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186
|||| ||| || || ||||| || |||||||| |||| ||||| | || | || |
Sbjct 189659 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCG-GC-CATCTT 189716
Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246
| || ||||| || || ||||| | ||||| ||||| | ||| | ||| ||||| |||
Sbjct 189717 CAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCT 189776
Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||||| | | ||||| |||| || || || |||| ||||| ||||
Sbjct 189777 GGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCT 189836
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| ||||||||||| ||||||||||||||
Sbjct 189837 TTCCAGTGAGGGTCTTGACGAAGATTTGCAT 189867
Score = 114 bits (126), Expect = 9e-21
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG-GCGAGTTGGCGCTCGTCGTC 44187
|| |||||||| || |||||| ||||||||||| ||| | || | ||| | || ||
Sbjct 189431 ACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGT-GCGACCATCTTC 189489
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || ||||| | |||||| ||||| | || | ||| ||||| |||
Sbjct 189490 CAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTG 189549
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| | | || ||||| |||||| ||||| | || || |||||
Sbjct 189550 AATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTT 189609
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||| |||||||| || || |||||
Sbjct 189610 TCCGGTGAGAGTCTTCACAAAAATCTGCAT 189639
Score = 96.9 bits (106), Expect = 2e-15
Identities = 143/201 (71%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || ||||| || ||||| || |||||||| ||||| || || | || ||
Sbjct 189887 ACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCG 189946
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||||| |||||||| || | ||| | || ||||| |||
Sbjct 189947 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 190006
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| |||| || || ||||| | || || ||||
Sbjct 190007 ATCTTTGACTTAACATTGT--CGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCT 190064
Query 44307 TTCCCGTGAGGGTCTTCACGA 44327
| || ||||||||||| ||||
Sbjct 190065 TGCCAGTGAGGGTCTTGACGA 190085
>seq938
Length=494683
Score = 100 bits (110), Expect = 2e-16
Identities = 133/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| || | || || |||||||| || || ||||
Sbjct 9205 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 9264
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| ||||| || || | || | || ||||| ||| ||||| ||| || |||
Sbjct 9265 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 9324
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | ||| || ||||| | || || ||||| ||||| |||||||||||
Sbjct 9325 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 9382
Query 44326 GAA 44328
|||
Sbjct 9383 GAA 9385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359982827376942
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |