Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 215 6e-51 seq7 114 2e-20 >seq5 Length=2590615 Score = 215 bits (238), Expect = 6e-51 Identities = 626/956 (65%), Gaps = 12/956 (1%) Strand=Plus/Plus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 1618601 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1618660 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 ||| || | |||||| || | || | ||| || ||||| |||||| ||||| Sbjct 1618661 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 1618720 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || |||||||| | || || ||| |||||| || | ||| || | ||| | Sbjct 1618721 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAG 1618780 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAA 53946 ||||||| ||| | ||| | ||| | ||| ||||| | |||| Sbjct 1618781 CTTCTGAGCCTTGATTGTC---TTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAG 1618837 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 || ||||| ||||| | | | | | ||||| || || | |||||||||| Sbjct 1618838 AGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCAG 1618897 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 | ||| || |||| | | || || ||||| || |||||||| |||||||| || | Sbjct 1618898 TGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAG 1618957 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || ||||| | || | ||||| || || ||||| ||||| ||||| | Sbjct 1618958 GAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATC 1619017 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | |||||| ||||| || || | ||| |||| | | | || || || ||||| || Sbjct 1619018 GAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCC 1619077 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 ||||| || | || | ||| ||||| || | || | | ||| |||| || |||||| Sbjct 1619078 ACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATT 1619137 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGAT 54304 |||| ||| ||||| |||| ||| || ||| | ||||||||| | | ||| | Sbjct 1619138 CGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT--T 1619195 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 ||||| || || || ||||| || ||||| | || || || | ||||| ||||| Sbjct 1619196 AGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATT 1619255 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 ||||| ||||| || ||| |||| | || | || || |||| |||| | || Sbjct 1619256 CCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGG 1619315 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | || || ||||| ||||| || | || ||| | |||||| Sbjct 1619316 GTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTG 1619375 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || ||||| | || || ||||| || || | || || | |||||||| | Sbjct 1619376 TATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATGAT 1619434 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| | || || ||||| || || || || | ||| ||| ||||| Sbjct 1619435 CATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAA 1619494 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 ||| || || ||||| || | |||| || || || || || | ||| | |||| Sbjct 1619495 AGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1619550 >seq7 Length=1585612 Score = 114 bits (126), Expect = 2e-20 Identities = 368/566 (65%), Gaps = 9/566 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| || || ||| ||||||||||| | | || | |||||||| || || || Sbjct 1401149 CATGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA 1401090 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || |||||||| || ||||| || || || || || | ||| ||||| Sbjct 1401089 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAG 1401030 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGT 24311 || || || || || |||||||||| || | | || | || | | || || Sbjct 1401029 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGG 1400970 Query 24312 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | || ||||| || ||||||||| | || || || ||||| || || || Sbjct 1400969 ATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 1400911 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||||||||| || | || || | ||||| || || | || || | Sbjct 1400910 GAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGT 1400851 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || ||||||||||| || || || || || |||||||| || | |||||| | || Sbjct 1400850 CTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGAT 1400791 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || || || ||||| || | | || || || || || || ||| ||| || Sbjct 1400790 CTGGACCTCACCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 1400731 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 24607 || || || | | || | ||| | | || || | |||| | || ||||| Sbjct 1400730 GAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCA 1400671 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 1400670 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTT 1400611 Query 24668 TTTATACATATTCCAGATGTCATGAT 24693 || ||||| | ||| || | ||||| Sbjct 1400610 CTTGTACATTTGCCAAATCT-ATGAT 1400586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720464507440