Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq5 280 1e-70
seq7 174 1e-38
seq15 122 8e-23
>seq5
Length=2590615
Score = 280 bits (310), Expect = 1e-70
Identities = 636/954 (67%), Gaps = 2/954 (0%)
Strand=Plus/Plus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|||||||| ||||| || || |||||||| | |||||| | |||||| || ||
Sbjct 1618602 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAA 1618661
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || || | || | |||||||| || || || || | ||||
Sbjct 1618662 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCC 1618721
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | || ||||| ||| | ||||| || || ||| |
Sbjct 1618722 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGC 1618781
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
||||||| | | ||| || ||| ||| || | ||||||||||| ||||| ||
Sbjct 1618782 TTCTGAGCCTTGATT-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 1618840
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
|| || || | ||||| |||||||| ||||| || | | | |||||||| || |
Sbjct 1618841 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGT 1618900
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| || |||||||| || |||| |||||||| || ||||| || ||| |||
Sbjct 1618901 CCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAA 1618960
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
|| || ||||| || |||||||| || ||| |||||| | ||| | || || ||
Sbjct 1618961 AAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAA 1619020
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
|| || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| ||
Sbjct 1619021 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 1619080
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| ||||| || || || ||||||||| | || | ||||| || || | ||| || ||
Sbjct 1619081 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGA 1619140
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
| ||| || || | || || | || |||| ||| || | | |||
Sbjct 1619141 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 1619200
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
|| || || || || || ||||| || || || ||||| |||||||| |||||
Sbjct 1619201 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1619260
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745
|| ||||| || || | | |||||||| || || |||| ||| | | || || |
Sbjct 1619261 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1619320
Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805
||| ||| || || ||| || ||||| ||| | | ||||| |||||||| ||
Sbjct 1619321 GGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGT 1619380
Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865
|| | | | || || || || || ||||| | | || ||||| |||||||
Sbjct 1619381 CTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACACGCATGATCATGTG 1619440
Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925
||||| | |||||| | |||| ||| |||| || ||||| || | || || ||
Sbjct 1619441 CTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTT 1619500
Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
|| ||||| || | || | || || || || | || ||||| || | |||
Sbjct 1619501 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 1619554
>seq7
Length=1585612
Score = 174 bits (192), Expect = 1e-38
Identities = 547/842 (65%), Gaps = 33/842 (4%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|||||| | |||||||| ||||| || || || || ||||| | || || | || ||
Sbjct 1400593 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 1400652
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGA-GAGAAATT--TTATTAAA 57686
|| |||||||| ||| ||| | || | | |||| ||| | || || |
Sbjct 1400653 TCCAAGGATCTCCACGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCTTTGTCTCT 1400712
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||| | | || || ||||| || || |||||||| || |||||||| | ||||| ||
Sbjct 1400713 CACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCGA 1400772
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || || | | ||||| | ||||| ||||| || || | ||
Sbjct 1400773 TTCAGTGGTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 1400832
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866
|| ||| | ||||| || | || || || || ||||| || ||| | ||||| || |
Sbjct 1400833 GAGAACATTCATTCCGAGACCTACTCCCTCCTTATCGACACATACATCAAGGAGCCCGCC 1400892
Query 57867 GAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925
|| ||| || || |||||||| || || || || ||| ||| |||||||| ||
Sbjct 1400893 CAGCGAACCTAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGA 1400951
Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGC 57982
||| | ||| |||||| | | | || || | || ||| || | || | ||
Sbjct 1400952 CTGGGCCATCCGATGGATCCAG---GATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGC 1401008
Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042
|| || || || || ||||| ||||| || ||| || | || || ||| | ||
Sbjct 1401009 CTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAA 1401068
Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102
||| || || || ||||| || ||||| || ||||||| | || || || ||||||||
Sbjct 1401069 GAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 1401128
Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT---------TGTCAATAAACC 58153
||| || ||||| ||||| ||||| | |||||||| | || || ||| |
Sbjct 1401129 TCTTCACACTGACTTTGCATGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGTAAGCA 1401188
Query 58154 GACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT 58213
|| | ||| ||| || ||||| || || ||| | || || | ||||| |
Sbjct 1401189 GATG---------ATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCT 1401239
Query 58214 CACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACAT 58273
||||||||| || || ||| | ||||| |||||| ||| | ||| |||||||
Sbjct 1401240 CACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACAT 1401299
Query 58274 TGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACG 58331
|||||| || || || | || | ||| || | |||| ||| ||||| |
Sbjct 1401300 TGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTC--TACAAGGCC 1401357
Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAA 58391
| || || || || |||||| | ||||| || | |||||||| ||||| |||||
Sbjct 1401358 ACCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAG 1401417
Query 58392 AA 58393
||
Sbjct 1401418 AA 1401419
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||||||| | || || || |
Sbjct 343858 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 343917
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || ||||||
Sbjct 343918 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 343977
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| || || || |||||||| ||| | || || || ||||||| ||
Sbjct 343978 CAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 344037
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || || || || ||||| ||
Sbjct 344038 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 344072
>seq15
Length=769536
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || || || || |||||| | || |||||| |
Sbjct 351322 ATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTTGAATCCAGT 351381
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | || || | || ||||||||| ||| | || ||||| |||
Sbjct 351382 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAG 351441
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||||| || |||||||| || ||||||||||| | || ||||||| || |||
Sbjct 351442 CAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 351501
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || || || |||||||| || || || |||| | |||||
Sbjct 351502 ATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGG 351548
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| || |||||| |||| ||||| | ||
Sbjct 350583 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 350642
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | | || | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 350643 CGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 350702
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || | || ||||| ||||| ||| | || ||| ||| | ||||| ||
Sbjct 350703 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 350762
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || || || ||||||||||| || ||
Sbjct 350763 CATTCAGAAGGAGTCCACTCTTCATCTTGTTCT 350795
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| ||||| || || ||||| || |||||| | || ||||| ||||||| | |||
Sbjct 350876 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACCATCG 350935
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | || || || || ||||||||| ||| | || || ||||| ||||| || |
Sbjct 350936 ACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAACAGCGCCTGA 350995
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| || ||||| || || | |||||| || | ||| || ||||||||||| |
Sbjct 350996 TCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAAAAGG 351055
Query 31383 AATCGACTCTTCATCTGGTACT 31404
|||| ||||| ||||| || ||
Sbjct 351056 AATCCACTCTCCATCTCGTCCT 351077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765547471760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |