Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7 150 4e-31 seq5 100 6e-16 >seq7 Length=1585612 Score = 150 bits (166), Expect = 4e-31 Identities = 300/443 (68%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| ||||| || |||||||| |||||||| ||||| || || |||||| Sbjct 1401004 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGG 1401063 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| || | |||||| ||| |||| ||| | ||| Sbjct 1401064 CTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGAC 1401123 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCT----GTTGA--AAAAGGGTTTTGTTGAT 102091 || |||||||| |||||||||||| | || | | |||||| || Sbjct 1401124 GAGGGTCTTCACACTGACTTTGCATGCCTCCTCCACTCTCACCTCAAGGGTCGTG----- 1401178 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| ||| | | ||| | || || ||||||| |||||| ||||| || || Sbjct 1401179 ---CCAGTAAG-CAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAG 1401234 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || ||||| | | || || | | | || ||||||| | | |||| ||| Sbjct 1401235 TTCCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAG 1401294 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 |||||||| || || || ||| || | || | | || || ||| ||| || Sbjct 1401295 TACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAG 1401354 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | |||||||||||| || ||||| || || ||||| | ||||||||||| || Sbjct 1401355 GCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTC 1401414 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || ||| | || ||||| || || Sbjct 1401415 GAGAAGCGTGTTGCCGACTACCA 1401437 >seq5 Length=2590615 Score = 100 bits (110), Expect = 6e-16 Identities = 177/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| |||||||||| || || ||| |||||||| || || |||||||| Sbjct 1619205 CCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATA 1619264 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT-CCACA 94910 || || || | | | | | |||||| || || | |||||| ||| | | || Sbjct 1619265 CTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGC-TGAGGGGTGCCGGC 1619323 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 ||| || || |||||||||||||| || || | | || ||||| |||| ||||| || Sbjct 1619324 ATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTC 1619383 Query 94971 AATGACAGATTTGATGTC-TGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 | ||| | ||| || | | || || | || |||| ||||||||| ||||||| || Sbjct 1619384 CAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATGATCATGTGCT 1619442 Query 95030 GAGGGCGCTCAAC 95042 |||||||||| || Sbjct 1619443 GAGGGCGCTCGAC 1619455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582060106115