Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 192 7e-44 seq7 132 6e-26 >seq5 Length=2590615 Score = 192 bits (212), Expect = 7e-44 Identities = 742/1148 (65%), Gaps = 26/1148 (2%) Strand=Plus/Plus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 1618601 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1618660 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 ||| || | ||| || || | || | ||| || ||||| |||||| ||||| Sbjct 1618661 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 1618720 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 1618721 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAA- 1618779 Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGTAT 63180 | || ||||||| ||| | ||| | |||| | || ||||| | ||| Sbjct 1618780 GCTTCTGAGCCTTGATTGTC---TTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTAC 1618835 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | | | |||||||| ||||| | | | | | | ||| || || | ||||||| Sbjct 1618836 AGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACA 1618893 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 ||| | ||| || |||| | | || || ||||| || |||||||| |||||||| | Sbjct 1618894 TCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 1618953 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 | | || ||||| | | | ||||| || || ||||| ||||| |||| Sbjct 1618954 CGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGA 1619013 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 | | | | |||||| ||||| || || | ||| ||||| | | | || || || |||| Sbjct 1619014 AATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGT 1619073 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 | || ||||| || | || | ||| ||||| || | || | | ||| |||| || || Sbjct 1619074 TGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACAC 1619133 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAAT 63538 | || ||| |||| |||||||||| ||| || ||| | ||||||||| | | || Sbjct 1619134 CATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACAT 1619193 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 | |||||| || || || ||||| || ||||| | || || || | || || || Sbjct 1619194 T--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTA 1619251 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 ||| || || || || || || |||| | || | || || |||| |||| | | Sbjct 1619252 GATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTG 1619311 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 || || || ||||| || | || || ||||| ||||| || | || ||| | || Sbjct 1619312 AGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAG 1619371 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 63777 |||||| ||||| | || || ||||| || || | || || | ||||||| Sbjct 1619372 ATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCA 1619430 Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837 | | |||||||||||| | || ||||| || || || || | | ||| ||| | Sbjct 1619431 TGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCT 1619490 Query 63838 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897 ||||||| || || ||||| || | |||| || || || || || | ||| | || | Sbjct 1619491 CCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1619550 Query 63898 TGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAA 63956 | || ||||||| | | || | ||| || ||| || || || || || Sbjct 1619551 CCAACTCCTCCTTATGTCGCATGAC-GCACTCATAAGTATCCTTGGAGATCATGGGTGAC 1619609 Query 63957 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC-CTC-CATCACTTCACTAAATA 64014 | || || || || || ||||||| | | | || ||| || || || || Sbjct 1619610 GGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGAGGTCGCTCACAACAGCGGAC--CATT 1619667 Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074 | || || || | |||||| || || || | ||| || | |||||| ||||||||||| | Sbjct 1619668 GCTTCTTGGTCTGCTTGTGAAGGTTGGAGACGGCAATGCGGGCGGCAAGAATGGCATAGT 1619727 Query 64075 CCGGATGT 64082 | || ||| Sbjct 1619728 CGGGGTGT 1619735 >seq7 Length=1585612 Score = 132 bits (146), Expect = 6e-26 Identities = 372/566 (66%), Gaps = 9/566 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||||| || || ||| ||||||||||| | | || | ||||| || || || || Sbjct 1401149 CATGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA 1401090 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || |||||||| || ||||| || || || ||||| | || |||||| Sbjct 1401089 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAG 1401030 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 33758 || || || || ||||||||||||| || | || || | || | | || || Sbjct 1401029 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGG 1400970 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| || ||||||||| | || || || || || ||||| || Sbjct 1400969 ATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 1400911 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||||||| || | || || | || || ||||| | || || | Sbjct 1400910 GAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGT 1400851 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || ||||||||||| || || ||||| || |||||||| || | |||||| | || Sbjct 1400850 CTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGAT 1400791 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || || ||||| || | | || || || || || |||||| ||| || Sbjct 1400790 CTGGACCTCACCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 1400731 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 || || || | | || | ||| | | || || | |||| | || ||||| Sbjct 1400730 GAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCA 1400671 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 1400670 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTT 1400611 Query 34115 TTTATACATATTCCAGATGTCATGAT 34140 || ||||| | ||| || | ||||| Sbjct 1400610 CTTGTACATTTGCCAAATCT-ATGAT 1400586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816395473840