Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq5 192 7e-44
seq7 132 6e-26
>seq5
Length=2590615
Score = 192 bits (212), Expect = 7e-44
Identities = 742/1148 (65%), Gaps = 26/1148 (2%)
Strand=Plus/Plus
Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007
||| || || || || || || ||||| | || | | || | || || ||||||||
Sbjct 1618601 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1618660
Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067
||| || | ||| || || | || | ||| || ||||| |||||| |||||
Sbjct 1618661 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 1618720
Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127
||| || || |||||||| | || || ||| |||| | || | ||| || | ||| |
Sbjct 1618721 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAA- 1618779
Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGTAT 63180
| || ||||||| ||| | ||| | |||| | || ||||| | |||
Sbjct 1618780 GCTTCTGAGCCTTGATTGTC---TTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTAC 1618835
Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240
| | | |||||||| ||||| | | | | | | ||| || || | |||||||
Sbjct 1618836 AGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACA 1618893
Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300
||| | ||| || |||| | | || || ||||| || |||||||| |||||||| |
Sbjct 1618894 TCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 1618953
Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360
| | || ||||| | | | ||||| || || ||||| ||||| ||||
Sbjct 1618954 CGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGA 1619013
Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420
| | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||
Sbjct 1619014 AATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGT 1619073
Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480
| || ||||| || | || | ||| ||||| || | || | | ||| |||| || ||
Sbjct 1619074 TGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACAC 1619133
Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAAT 63538
| || ||| |||| |||||||||| ||| || ||| | ||||||||| | | ||
Sbjct 1619134 CATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACAT 1619193
Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598
| |||||| || || || ||||| || ||||| | || || || | || || ||
Sbjct 1619194 T--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTA 1619251
Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658
||| || || || || || || |||| | || | || || |||| |||| | |
Sbjct 1619252 GATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTG 1619311
Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718
|| || || ||||| || | || || ||||| ||||| || | || ||| | ||
Sbjct 1619312 AGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAG 1619371
Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 63777
|||||| ||||| | || || ||||| || || | || || | |||||||
Sbjct 1619372 ATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCA 1619430
Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63837
| | |||||||||||| | || ||||| || || || || | | ||| ||| |
Sbjct 1619431 TGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCT 1619490
Query 63838 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897
||||||| || || ||||| || | |||| || || || || || | ||| | || |
Sbjct 1619491 CCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1619550
Query 63898 TGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAA 63956
| || ||||||| | | || | ||| || ||| || || || || ||
Sbjct 1619551 CCAACTCCTCCTTATGTCGCATGAC-GCACTCATAAGTATCCTTGGAGATCATGGGTGAC 1619609
Query 63957 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC-CTC-CATCACTTCACTAAATA 64014
| || || || || || ||||||| | | | || ||| || || || ||
Sbjct 1619610 GGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGAGGTCGCTCACAACAGCGGAC--CATT 1619667
Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074
| || || || | |||||| || || || | ||| || | |||||| ||||||||||| |
Sbjct 1619668 GCTTCTTGGTCTGCTTGTGAAGGTTGGAGACGGCAATGCGGGCGGCAAGAATGGCATAGT 1619727
Query 64075 CCGGATGT 64082
| || |||
Sbjct 1619728 CGGGGTGT 1619735
>seq7
Length=1585612
Score = 132 bits (146), Expect = 6e-26
Identities = 372/566 (66%), Gaps = 9/566 (2%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
||||| || || ||| ||||||||||| | | || | ||||| || || || ||
Sbjct 1401149 CATGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA 1401090
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||| || |||||||| || ||||| || || || ||||| | || ||||||
Sbjct 1401089 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAG 1401030
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 33758
|| || || || ||||||||||||| || | || || | || | | || ||
Sbjct 1401029 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGG 1400970
Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| | || ||||| || ||||||||| | || || || || || ||||| ||
Sbjct 1400969 ATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 1400911
Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877
||||||||| || | || || | || || ||||| | || || |
Sbjct 1400910 GAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGT 1400851
Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937
|| ||||||||||| || || ||||| || |||||||| || | |||||| | ||
Sbjct 1400850 CTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGAT 1400791
Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997
||| || || || ||||| || | | || || || || || |||||| ||| ||
Sbjct 1400790 CTGGACCTCACCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 1400731
Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054
|| || || | | || | ||| | | || || | |||| | || |||||
Sbjct 1400730 GAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCA 1400671
Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114
|| | || ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 1400670 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTT 1400611
Query 34115 TTTATACATATTCCAGATGTCATGAT 34140
|| ||||| | ||| || | |||||
Sbjct 1400610 CTTGTACATTTGCCAAATCT-ATGAT 1400586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629816395473840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |