Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq5 241 2e-58
seq7 127 3e-24
>seq5
Length=2590615
Score = 241 bits (266), Expect = 2e-58
Identities = 755/1149 (66%), Gaps = 28/1149 (2%)
Strand=Plus/Plus
Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679
||| || || || || || || ||||| | || | | || | || |||||||||||
Sbjct 1618601 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1618660
Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739
||||| | ||||| || | || | ||| || ||||| |||||| |||||
Sbjct 1618661 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATC 1618720
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
||| || || ||||| || | || || ||| |||| | || | ||| || | ||| |
Sbjct 1618721 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAA- 1618779
Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGT--GTATA 79853
| || ||||||| ||| | |||| | ||| | ||| ||||| | | ||| |
Sbjct 1618780 GCTTCTGAGCCTTGATTGT---CTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACA 1618836
Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913
| | |||||||| ||||| | ||| | | ||||| || |||| ||||||||
Sbjct 1618837 GAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGACACAT 1618894
Query 79914 CAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971
|| | ||| || || | || ||| || || ||||| || |||||||| ||||||||
Sbjct 1618895 CAGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGG 1618952
Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031
|| | || ||||| | || | |||||| || || ||||| ||||| |||
Sbjct 1618953 GCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGG 1619012
Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091
|| | | | |||||| ||||| || || | ||| ||||| | | | || ||||| |||
Sbjct 1619013 AAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG 1619072
Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151
|| || ||||| || | || | ||| ||||| || | || | | ||| |||| || |
Sbjct 1619073 TTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACA 1619132
Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAA 80209
||||| |||||||| ||||| |||| ||| || ||| | ||||||||| | | |
Sbjct 1619133 CCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACA 1619192
Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269
|| |||||| || || || ||||| || ||||| | || || || | ||||| |
Sbjct 1619193 TT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGT 1619250
Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329
|||| ||||| || || || || |||| | || | || || |||| |||| |
Sbjct 1619251 AGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCT 1619310
Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389
|| || || ||||| || | || || ||||| ||||| || | || ||||| |
Sbjct 1619311 GAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCA 1619370
Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGC 80448
||||||| ||||| | || || ||||| || || | || || | ||||||
Sbjct 1619371 GATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGC 1619429
Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508
|| | |||||||||||| | || || ||||| | || || | | ||| |||
Sbjct 1619430 ATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGC 1619489
Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568
|||||||| || || ||||| || | |||| || || || || || | ||| | |||
Sbjct 1619490 TCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAG 1619549
Query 80569 TTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGA 80627
| | | ||||||| | | || || ||| || ||| || || || || ||
Sbjct 1619550 TCCAACTCCTCCTTATGTCGCATGAC-GCACTCATAAGTATCCTTGGAGATCATGGGTGA 1619608
Query 80628 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC-CTC-CATCACTTCACTAAAT 80685
| || || || || || ||||||| | | | || ||| || || || ||
Sbjct 1619609 CGGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGAGGTCGCTCACAACAGCGGAC--CAT 1619666
Query 80686 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAA 80745
| || || || | |||||| || || || ||||| || | |||||| | |||||||||
Sbjct 1619667 TGCTTCTTGGTCTGCTTGTGAAGGTTGGAGACGGCAATGCGGGCGGCAAGAATGGCATAG 1619726
Query 80746 TCTGGATGT 80754
|| || |||
Sbjct 1619727 TCGGGGTGT 1619735
>seq7
Length=1585612
Score = 127 bits (140), Expect = 3e-24
Identities = 371/566 (66%), Gaps = 9/566 (2%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
||||| || || ||| ||||||||||| | | || || |||||||| || || ||
Sbjct 1401149 CATGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA 1401090
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| ||||| || |||||||| || ||||| || || || || || | ||| ||||||
Sbjct 1401089 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAG 1401030
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136
|| || || || || ||||||||||| || | || || | || | | || ||
Sbjct 1401029 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGG 1400970
Query 50137 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| | || ||||| || ||||||||| | || || || || || ||||| ||
Sbjct 1400969 ATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 1400911
Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255
||||||||| || | || || | || || ||||| | || || |
Sbjct 1400910 GAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGT 1400851
Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315
|| ||||||||||| || || ||||| || |||||||| || | |||||| | ||
Sbjct 1400850 CTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGAT 1400791
Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375
||| || || || ||||| || | | || || || || || || ||| ||| ||
Sbjct 1400790 CTGGACCTCACCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 1400731
Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCA 50432
|| || || | | || | ||| | || | | |||| | || |||||
Sbjct 1400730 GAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCA 1400671
Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492
|| | || ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 1400670 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTT 1400611
Query 50493 TTTATACATATTCCAGATGTCATGAT 50518
|| ||||| | ||| || | |||||
Sbjct 1400610 CTTGTACATTTGCCAAATCT-ATGAT 1400586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718267426310920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |