Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq7 239 7e-58
seq5 134 2e-26
>seq7
Length=1585612
Score = 239 bits (264), Expect = 7e-58
Identities = 576/856 (67%), Gaps = 32/856 (4%)
Strand=Plus/Plus
Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070
||||| | |||||| |||||||||| |||||| |||| ||||| ||||| | || |||
Sbjct 1400586 ATCAT-AGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGA 1400644
Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130
| ||||| |||||||| || |||| ||| | | || | |||| ||||| |
Sbjct 1400645 TTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCT 1400704
Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-G 125189
|| | || ||||| | || ||||| || | ||| ||||| ||||||||||| || || |
Sbjct 1400705 TTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCG 1400764
Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCA 125248
| || |||||| | ||| | || || |||| |||| |||| ||||| |||||
Sbjct 1400765 TCGAG-CGATTCAGTGGTGAGGTCCAGATCCCTGAGGC-TCGTTGCTTCTACGGCTTCCA 1400822
Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308
|||||||| |||||| | || || || | ||||| || || |||| |||||
Sbjct 1400823 GATCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTTATCGACACATACATCAA 1400882
Query 125309 CGATCC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367
|| || || | ||| || ||||| ||||| || || || | || | || || |
Sbjct 1400883 GGAGCCCGCCCAGCGAACCTAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAA 1400941
Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427
| |||||| | |||| || || |||||| | || | | || || | ||| | | |
Sbjct 1400942 AGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTC 1401001
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
| || || || || || || ||||| |||||||| ||| || || | ||||| |
Sbjct 1401002 TCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCT 1401061
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
||||||||||||| || |||||||| || ||||| | |||||| | || ||||| |
Sbjct 1401062 GGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTG 1401121
Query 125548 ACGAGGGCCTACACTGTGACTTTGC---CATTCTACTGTTTCGCAACTATCTGCGTCCCG 125604
||||||| || ||| ||||||||| | | || | | || | | | ||| ||
Sbjct 1401122 ACGAGGGTCTTCACACTGACTTTGCATGCCTCCTCCACTCTCACCTCAAGGGTCGTGCC- 1401180
Query 125605 AGT--GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662
||| |||||| ||| ||| |||| | || |||||||| | || ||
Sbjct 1401181 AGTAAGCAGAT-----GAT--CCAGGATATCA------TCACTGATGCCGTCACCATTGA 1401227
Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAAT 125722
|| ||||| || |||||| | || || | | | |||||||||| | || ||
Sbjct 1401228 GCAGGAGTTCCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCAT 1401287
Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAA 125779
| ||||||| ||||| || || |||||||| || || ||||| || ||
Sbjct 1401288 GAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAA 1401344
Query 125780 GATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGAC 125839
| | ||||| |||| || ||||| || || ||| | ||| || || | || |||||
Sbjct 1401345 GGTCTACAAGGCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGCAAGAC 1401404
Query 125840 CAACTTTTTCGAGAAG 125855
|||||| |||||||||
Sbjct 1401405 CAACTTCTTCGAGAAG 1401420
>seq5
Length=2590615
Score = 134 bits (148), Expect = 2e-26
Identities = 312/464 (67%), Gaps = 10/464 (2%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | ||
Sbjct 1619083 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 1619024
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || | || | || || ||| || || |||| || ||| | ||
Sbjct 1619023 GTCTTCGATTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGAT 1618964
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052
| || || || ||| | || ||| | ||||||||||| || || ||||||
Sbjct 1618963 CTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGTG-- 1618906
Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112
|||||| || ||||| ||| || || || || || |||| |||| || || |||
Sbjct 1618905 -ACTGGACACTGATGTGTCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAG 1618847
Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171
|| ||||| |||| |||||| | |||||| | || |||| | || | ||
Sbjct 1618846 TTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACAA-TCAAGGC 1618788
Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230
| |||| || ||| | ||||| | ||| ||| ||||| |||| || | ||| |
Sbjct 1618787 TC-AGAAGCTTTGGTACGCCATTCTCGAGGCCCAGACTGAGACCGGAAACCCATTCATGC 1618729
Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290
||||||||||| || || ||||| ||||||||| || | || |||||| |||
Sbjct 1618728 TCTACAAGGATGCCTGTAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCT 1618669
Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
|||| || ||||| |||||| | |||||| |||| ||||||
Sbjct 1618668 CCAACCTTTGCACTGAAATTATCGAGTACTGTGCTCCTGACGAG 1618625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057782724280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |