Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 239 7e-58 seq5 134 2e-26 >seq7 Length=1585612 Score = 239 bits (264), Expect = 7e-58 Identities = 576/856 (67%), Gaps = 32/856 (4%) Strand=Plus/Plus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 ||||| | |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| Sbjct 1400586 ATCAT-AGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGA 1400644 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 | ||||| |||||||| || |||| ||| | | || | |||| ||||| | Sbjct 1400645 TTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCT 1400704 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-G 125189 || | || ||||| | || ||||| || | ||| ||||| ||||||||||| || || | Sbjct 1400705 TTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCG 1400764 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCA 125248 | || |||||| | ||| | || || |||| |||| |||| ||||| ||||| Sbjct 1400765 TCGAG-CGATTCAGTGGTGAGGTCCAGATCCCTGAGGC-TCGTTGCTTCTACGGCTTCCA 1400822 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 |||||||| |||||| | || || || | ||||| || || |||| ||||| Sbjct 1400823 GATCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTTATCGACACATACATCAA 1400882 Query 125309 CGATCC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 || || || | ||| || ||||| ||||| || || || | || | || || | Sbjct 1400883 GGAGCCCGCCCAGCGAACCTAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAA 1400941 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 | |||||| | |||| || || |||||| | || | | || || | ||| | | | Sbjct 1400942 AGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTC 1401001 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 | || || || || || || ||||| |||||||| ||| || || | ||||| | Sbjct 1401002 TCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCT 1401061 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || |||||||| || ||||| | |||||| | || ||||| | Sbjct 1401062 GGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTG 1401121 Query 125548 ACGAGGGCCTACACTGTGACTTTGC---CATTCTACTGTTTCGCAACTATCTGCGTCCCG 125604 ||||||| || ||| ||||||||| | | || | | || | | | ||| || Sbjct 1401122 ACGAGGGTCTTCACACTGACTTTGCATGCCTCCTCCACTCTCACCTCAAGGGTCGTGCC- 1401180 Query 125605 AGT--GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662 ||| |||||| ||| ||| |||| | || |||||||| | || || Sbjct 1401181 AGTAAGCAGAT-----GAT--CCAGGATATCA------TCACTGATGCCGTCACCATTGA 1401227 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAAT 125722 || ||||| || |||||| | || || | | | |||||||||| | || || Sbjct 1401228 GCAGGAGTTCCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCAT 1401287 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAA 125779 | ||||||| ||||| || || |||||||| || || ||||| || || Sbjct 1401288 GAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAA 1401344 Query 125780 GATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGAC 125839 | | ||||| |||| || ||||| || || ||| | ||| || || | || ||||| Sbjct 1401345 GGTCTACAAGGCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGCAAGAC 1401404 Query 125840 CAACTTTTTCGAGAAG 125855 |||||| ||||||||| Sbjct 1401405 CAACTTCTTCGAGAAG 1401420 >seq5 Length=2590615 Score = 134 bits (148), Expect = 2e-26 Identities = 312/464 (67%), Gaps = 10/464 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 1619083 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 1619024 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | || Sbjct 1619023 GTCTTCGATTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGAT 1618964 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | || || || ||| | || ||| | ||||||||||| || || |||||| Sbjct 1618963 CTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGTG-- 1618906 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||| ||| || || || || || |||| |||| || || ||| Sbjct 1618905 -ACTGGACACTGATGTGTCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAG 1618847 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 || ||||| |||| |||||| | |||||| | || |||| | || | || Sbjct 1618846 TTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACAA-TCAAGGC 1618788 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | ||||| | ||| ||| ||||| |||| || | ||| | Sbjct 1618787 TC-AGAAGCTTTGGTACGCCATTCTCGAGGCCCAGACTGAGACCGGAAACCCATTCATGC 1618729 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||||| || || ||||| ||||||||| || | || |||||| ||| Sbjct 1618728 TCTACAAGGATGCCTGTAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCT 1618669 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||| || ||||| |||||| | |||||| |||| |||||| Sbjct 1618668 CCAACCTTTGCACTGAAATTATCGAGTACTGTGCTCCTGACGAG 1618625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057782724280