Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq15 138 3e-27
>seq15
Length=769536
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || ||||| || ||||| || ||||| | || |||| ||||||
Sbjct 351077 AGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 351018
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| ||||||||||| || || | |||||| |||||||| || || || || |||
Sbjct 351017 TCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCC 350958
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || ||||| || | ||||||| | || ||||| || || || |||
Sbjct 350957 TGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTC 350898
Query 104528 TTACCAGTAAGTGTTTTTACAAATAT 104553
|| ||||| || || || || | |||
Sbjct 350897 TTGCCAGTGAGGGTCTTGACGACTAT 350872
Score = 95.1 bits (104), Expect = 3e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || |||||||| || || ||||| ||||| | |||||
Sbjct 350795 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 350736
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || || ||||| | | || || || || || || || || || |||
Sbjct 350735 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 350676
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || || || || | || ||| || || ||||| || || || |||
Sbjct 350675 TGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 350616
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || | || || || || ||||||||
Sbjct 350615 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 350584
Score = 93.3 bits (102), Expect = 1e-13
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| | || | ||| ||||| | || || |||
Sbjct 351518 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCA 351459
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481
|| || || || | || ||||| || || || || || || ||||||||| ||||| ||
Sbjct 351458 GCGAAGATAAGACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 351400
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | || || || | ||| ||||| || || || ||||| |||||||| ||
Sbjct 351399 CACGTTGTCGATAGTGTCACTGGATTCAACCTCAAGGGTGATGGTCTTTCCAGTAAGAGT 351340
Query 104542 TTTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 351339 CTTCACGAAGATCTGCAT 351322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151396142899324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |