Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15 138 3e-27 >seq15 Length=769536 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| || ||||| || ||||| | || |||| |||||| Sbjct 351077 AGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 351018 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| ||||||||||| || || | |||||| |||||||| || || || || ||| Sbjct 351017 TCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCC 350958 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || ||||| || | ||||||| | || ||||| || || || ||| Sbjct 350957 TGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTC 350898 Query 104528 TTACCAGTAAGTGTTTTTACAAATAT 104553 || ||||| || || || || | ||| Sbjct 350897 TTGCCAGTGAGGGTCTTGACGACTAT 350872 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || |||||||| || || ||||| ||||| | ||||| Sbjct 350795 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 350736 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || ||||| | | || || || || || || || || || ||| Sbjct 350735 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 350676 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || || || || | || ||| || || ||||| || || || ||| Sbjct 350675 TGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 350616 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || || || |||||||| Sbjct 350615 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 350584 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || | ||| ||||| | || || ||| Sbjct 351518 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCA 351459 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | || ||||| || || || || || || ||||||||| ||||| || Sbjct 351458 GCGAAGATAAGACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATC-TTGCTCTT 351400 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | ||| ||||| || || || ||||| |||||||| || Sbjct 351399 CACGTTGTCGATAGTGTCACTGGATTCAACCTCAAGGGTGATGGTCTTTCCAGTAAGAGT 351340 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 351339 CTTCACGAAGATCTGCAT 351322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396142899324