Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 107 3e-19 seq19 104 4e-18 >seq8 Length=1474389 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | ||||| ||||| ||||||||||||||||| ||||| Sbjct 176569 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATTCAAGGAATCACCAAGCCCGCTAT 176511 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| |||||| Sbjct 176510 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 176470 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | |||| |||||| || || |||| ||| | Sbjct 176410 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGACCTTCCTTGAGGGTGTCATCCGTGACG 176351 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || || || |||||||| || || ||||||||||| ||| | || ||||||| | Sbjct 176350 CTGTCACATACACTGAGCACGCCAAGCGCAAGACTGTCACATCCCTCGACGTCGTCTACG 176291 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || || |||| | || ||||| || ||||| Sbjct 176290 CTCTCAAGCGACAGGGACGTACCCTCTACGGTTTCGGTGGTTAA 176247 >seq19 Length=634961 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | ||||| |||||||| || ||||||||||| ||||| Sbjct 495814 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 495872 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||| ||||| ||||||||| | |||| Sbjct 495873 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATTTCTG 495913 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| |||||| |||||| || ||| || | ||| | Sbjct 495968 TGATCTACGAGGAGACCCGCGGTGTCCTGAAGACATTCCTCGAGGGCGTCATTCGTGACG 496027 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || |||||||||||| || || || ||||| ||||| || | ||| | ||||| | Sbjct 496028 CCGTCACCTATACCGAGCATGCCAAGCGCAAGACAGTCACATCTCTCGATGTTGTCTACG 496087 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || |||||||| | |||| ||||| || ||||| Sbjct 496088 CCCTGAAGCGACAAGGCCGCACCCTTTACGGTTTCGGTGGTTAA 496131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075060111029