Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq15 98.7 9e-16
>seq15
Length=769536
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064
||| | || ||||| | || || || ||||||| | || || |||||||| || ||
Sbjct 350872 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACC 350931
Query 25065 ATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121
||||| || || ||| | || | ||| ||||| || || || || ||||||||||||
Sbjct 350932 ATCGA--CAATGTTAAGTCGAAGATTCAG-GACAAGGAGGGCATCCCTCCTGACCAACAG 350988
Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181
|| | || ||||| || || ||| | ||||| | || || | | ||| ||||| |||
Sbjct 350989 CGCCTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATT 351048
Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| |||||||| || ||| | || ||
Sbjct 351049 CAAAAGGAATCCACTCTCCATCTCGTCCT 351077
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | || || || ||||||| | || || || || |
Sbjct 351322 ATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTTGAATCCAGT 351381
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||||||||| ||||| || || ||||| || || || || || || ||
Sbjct 351382 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAG 351441
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || |||| || || || || || || ||||||| |||||| || |||| |||||
Sbjct 351442 CAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 351501
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || || || || ||
Sbjct 351502 ATCCAGAAGGAGTCAACTCTTCA 351524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327191978695
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |