Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq7 134 3e-26
seq5 109 1e-18
seq31 105 1e-17
seq6 98.7 2e-15
>seq7
Length=1585612
Score = 134 bits (148), Expect = 3e-26
Identities = 385/587 (66%), Gaps = 19/587 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| |||||| |||||||||||||| |||
Sbjct 1401416 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTGGTG 1401357
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| ||| | |||||| || || | || || || || || ||||| |
Sbjct 1401356 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 1401297
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || |||||||||||||| | | ||| |||| || || || |
Sbjct 1401296 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGAGCTTCGGTGAGG 1401237
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-----TGCCA 251794
|| |||| || ||| || || || | || ||| ||| ||| || ||
Sbjct 1401236 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATCTGCTTACTGGCA 1401177
Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854
||| |||| || | |||| ||||| |||| | ||| |||||||
Sbjct 1401176 C-GACC-CTTG------AGGTGAGAGTGGAGGAGGCATGCAAAGTCAGTGTGAAGACCCT 1401125
Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914
|||| ||| ||||| ||||||||| | | ||| |||||||| | ||||| ||| |||
Sbjct 1401124 CGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACGCTTCTTGA 1401065
Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974
|||||||||| | | |||| ||| ||| | | |||||| ||| | | ||||
Sbjct 1401064 GCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCAAAGGCAA 1401005
Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCT 252031
| || |||| ||||| || ||||| | || | || | ||||| | ||||
Sbjct 1401004 CGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCAGCCT 1400945
Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091
|||||| | ||| || || || || || | |||||| || | |||| ||| |
Sbjct 1400944 TCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTCGCTGGGCGGGCT 1400885
Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138
||| |||| | || | ||||| ||||| |||| ||||| |||
Sbjct 1400884 CCTTGATGTATGTGTCGATAAGGAGGGAGTAGGTCTCGGAATGAATG 1400838
>seq5
Length=2590615
Score = 109 bits (120), Expect = 1e-18
Identities = 418/644 (65%), Gaps = 13/644 (2%)
Strand=Plus/Plus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173
||| | |||||| | |||||||| ||||||||||| | | || || || | | ||
Sbjct 1617824 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 1617882
Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233
|||||||||| |||||||||| |||||||| || | | | ||| || ||||
Sbjct 1617883 AGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATGTTGGGAATGTTCT 1617942
Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292
| || || || | ||||| || |||||||||| | |||||||| || |||| |
Sbjct 1617943 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG- 1618001
Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352
| | || || || || | | ||||||||| ||||||||||||||||| ||
Sbjct 1618002 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGG 1618061
Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412
|| ||| || || || ||| ||| ||| ||| || |||||| |
Sbjct 1618062 CGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAG 1618121
Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469
||| || ||||||||| ||||| |||| ||| | | || | |||||||
Sbjct 1618122 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 1618181
Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527
| | ||| | |||||| |||||| ||| || ||| | || ||| | | |
Sbjct 1618182 TCCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGTTTGACGTTCCACATGTCAA 1618239
Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587
|||| | |||||||| ||| || || |||| ||||||| | ||| || | ||| |
Sbjct 1618240 ACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCT 1618299
Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646
|| |||| ||| || || | ||||| |||||| ||||||||||| |
Sbjct 1618300 TAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTG 1618358
Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706
||||||| ||||||| || || || ||||| ||| | ||| ||||
Sbjct 1618359 TTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCG 1618418
Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750
|| ||||| ||||| | ||||| ||| || | ||| |||| ||
Sbjct 1618419 AGGCCCTGAACACCCAGACCAATGGGTCGGTGGCGCATGTTACT 1618462
>seq31
Length=392470
Score = 105 bits (116), Expect = 1e-17
Identities = 175/250 (70%), Gaps = 2/250 (1%)
Strand=Plus/Minus
Query 279321 GAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCA 279380
||||| ||| |||| ||| ||||||||||| || ||||| ||||| || ||
Sbjct 98019 GAAGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCC 97960
Query 279381 TATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTAT 279440
|| |||| |||||||| || ||| |||| ||| |||||||||| | || ||
Sbjct 97959 TACGGTGCCAAGATTCTTCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGTTAC 97900
Query 279441 GGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGT 279500
||||| ||||||||| || | || ||| |||||| |||||||| || ||||
Sbjct 97899 GGTCTTTGCGGTCCCAACGGTTCCGGAAAGTCCACTCTCATGCGCGCTATCAACAACGAG 97840
Query 279501 CAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACAT 279559
||| | || || || ||||| ||| ||||| | ||| || | || ||||||||| |
Sbjct 97839 CAGGTTGAGGGTTTCCCTAA-GCAGAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCT 97781
Query 279560 CGACTCCTCT 279569
|||||| ||
Sbjct 97780 TGACTCCGCT 97771
Score = 89.7 bits (98), Expect = 1e-12
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| || ||||| ||||| || ||| ||||| |||| | | ||
Sbjct 96593 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGACTGTCCTTGCCGCTT 96534
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | ||||| | ||||| || |||||||||||||||||||| |||||
Sbjct 96533 GCTCT-TGGCAGCGACCTCATCTTATCGTCCTTGACGAGCCTACCAACTATCTCGACCGT 96475
Query 280821 GAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTCATT 280880
|| ||| || || ||| || ||| | | |||| || || ||| | |||||
Sbjct 96474 GACTCCCTCGGTGCCCTGTCCAAGGCCCTGAAGAAGTTTGAGGGTGGTGTCATCATCATT 96415
Query 280881 TCTCAC 280886
|||||
Sbjct 96414 ACTCAC 96409
>seq6
Length=2559796
Score = 98.7 bits (108), Expect = 2e-15
Identities = 141/197 (72%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| ||||| || || || |||||||||||||||||||| || | || || || || |
Sbjct 1956515 AGTTGGTTCCCTCTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 1956456
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
||||||||| ||||| || || || || || || ||||| | || ||||| | ||
Sbjct 1956455 GCGTGCCGACGTCCTCCTTCTCGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 1956396
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872
|||||| | | |||||| | ||||| | || | | |||||||| ||||||
Sbjct 1956395 CTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 1956338
Query 279873 GACTCTGGCTTCCTAGA 279889
||||| || ||||| ||
Sbjct 1956337 GACTCCGGATTCCTGGA 1956321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834785118673
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |