Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 134 3e-26 seq5 109 1e-18 seq31 105 1e-17 seq6 98.7 2e-15 >seq7 Length=1585612 Score = 134 bits (148), Expect = 3e-26 Identities = 385/587 (66%), Gaps = 19/587 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| |||||| |||||||||||||| ||| Sbjct 1401416 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTGGTG 1401357 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 1401356 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 1401297 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| || || || | Sbjct 1401296 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGAGCTTCGGTGAGG 1401237 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-----TGCCA 251794 || |||| || ||| || || || | || ||| ||| ||| || || Sbjct 1401236 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATCTGCTTACTGGCA 1401177 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 ||| |||| || | |||| ||||| |||| | ||| ||||||| Sbjct 1401176 C-GACC-CTTG------AGGTGAGAGTGGAGGAGGCATGCAAAGTCAGTGTGAAGACCCT 1401125 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 |||| ||| ||||| ||||||||| | | ||| |||||||| | ||||| ||| ||| Sbjct 1401124 CGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACGCTTCTTGA 1401065 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | | |||| ||| ||| | | |||||| ||| | | |||| Sbjct 1401064 GCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCAAAGGCAA 1401005 Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCT 252031 | || |||| ||||| || ||||| | || | || | ||||| | |||| Sbjct 1401004 CGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCAGCCT 1400945 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 |||||| | ||| || || || || || | |||||| || | |||| ||| | Sbjct 1400944 TCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTCGCTGGGCGGGCT 1400885 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 ||| |||| | || | ||||| ||||| |||| ||||| ||| Sbjct 1400884 CCTTGATGTATGTGTCGATAAGGAGGGAGTAGGTCTCGGAATGAATG 1400838 >seq5 Length=2590615 Score = 109 bits (120), Expect = 1e-18 Identities = 418/644 (65%), Gaps = 13/644 (2%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | |||||| | |||||||| ||||||||||| | | || || || | | || Sbjct 1617824 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 1617882 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 |||||||||| |||||||||| |||||||| || | | | ||| || |||| Sbjct 1617883 AGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATGTTGGGAATGTTCT 1617942 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292 | || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 1617943 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG- 1618001 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | || || || || | | ||||||||| ||||||||||||||||| || Sbjct 1618002 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGG 1618061 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412 || ||| || || || ||| ||| ||| ||| || |||||| | Sbjct 1618062 CGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAG 1618121 Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469 ||| || ||||||||| ||||| |||| ||| | | || | ||||||| Sbjct 1618122 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 1618181 Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527 | | ||| | |||||| |||||| ||| || ||| | || ||| | | | Sbjct 1618182 TCCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGTTTGACGTTCCACATGTCAA 1618239 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||| | |||||||| ||| || || |||| ||||||| | ||| || | ||| | Sbjct 1618240 ACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCT 1618299 Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 || |||| ||| || || | ||||| |||||| ||||||||||| | Sbjct 1618300 TAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTG 1618358 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 ||||||| ||||||| || || || ||||| ||| | ||| |||| Sbjct 1618359 TTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCG 1618418 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750 || ||||| ||||| | ||||| ||| || | ||| |||| || Sbjct 1618419 AGGCCCTGAACACCCAGACCAATGGGTCGGTGGCGCATGTTACT 1618462 >seq31 Length=392470 Score = 105 bits (116), Expect = 1e-17 Identities = 175/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 279321 GAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCA 279380 ||||| ||| |||| ||| ||||||||||| || ||||| ||||| || || Sbjct 98019 GAAGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCC 97960 Query 279381 TATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTAT 279440 || |||| |||||||| || ||| |||| ||| |||||||||| | || || Sbjct 97959 TACGGTGCCAAGATTCTTCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGTTAC 97900 Query 279441 GGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGT 279500 ||||| ||||||||| || | || ||| |||||| |||||||| || |||| Sbjct 97899 GGTCTTTGCGGTCCCAACGGTTCCGGAAAGTCCACTCTCATGCGCGCTATCAACAACGAG 97840 Query 279501 CAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACAT 279559 ||| | || || || ||||| ||| ||||| | ||| || | || ||||||||| | Sbjct 97839 CAGGTTGAGGGTTTCCCTAA-GCAGAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCT 97781 Query 279560 CGACTCCTCT 279569 |||||| || Sbjct 97780 TGACTCCGCT 97771 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| ||||| || ||| ||||| |||| | | || Sbjct 96593 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGACTGTCCTTGCCGCTT 96534 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | ||||| | ||||| || |||||||||||||||||||| ||||| Sbjct 96533 GCTCT-TGGCAGCGACCTCATCTTATCGTCCTTGACGAGCCTACCAACTATCTCGACCGT 96475 Query 280821 GAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTCATT 280880 || ||| || || ||| || ||| | | |||| || || ||| | ||||| Sbjct 96474 GACTCCCTCGGTGCCCTGTCCAAGGCCCTGAAGAAGTTTGAGGGTGGTGTCATCATCATT 96415 Query 280881 TCTCAC 280886 ||||| Sbjct 96414 ACTCAC 96409 >seq6 Length=2559796 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 1956515 AGTTGGTTCCCTCTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 1956456 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||||||||| ||||| || || || || || || ||||| | || ||||| | || Sbjct 1956455 GCGTGCCGACGTCCTCCTTCTCGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 1956396 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 |||||| | | |||||| | ||||| | || | | |||||||| |||||| Sbjct 1956395 CTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 1956338 Query 279873 GACTCTGGCTTCCTAGA 279889 ||||| || ||||| || Sbjct 1956337 GACTCCGGATTCCTGGA 1956321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834785118673