Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 379 4e-100 seq5 313 5e-80 >seq7 Length=1585612 Score = 379 bits (420), Expect = 4e-100 Identities = 599/846 (71%), Gaps = 18/846 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 1400602 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGAT 1400661 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || || ||| | || |||| || || |||| | Sbjct 1400662 CTCCACGACTGGAA--CAACCGCCTAACTGCTGATGAGCAGTTCTTTGTCTCTCACATCC 1400719 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 1400720 TTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCGATTCAGTG 1400779 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | |||||| || |||||||||||||||||||| || |||||| Sbjct 1400780 GTGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 1400839 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | || || ||| ||| || || || |||| |||||| ||| |||| | |||| | Sbjct 1400840 TTCATTCCGAGACCTACTCCCTCCTTATCGACACATACATCAAGGAGCCCGCCCAGCGAA 1400899 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| ||||| || ||||||||| |||||||| |||||||| Sbjct 1400900 CCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 1400959 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| || | ||| | | || | | || | || || |||||| | || | Sbjct 1400960 TCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTG 1401019 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTG 42782 | ||||| ||||||||| || ||||||||||| ||||||||||||||| || ||| Sbjct 1401020 TTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTC 1401079 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || || || ||||| ||||| |||||| | |||||||| || || | Sbjct 1401080 TC-ATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACT 1401138 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCGGGT 42901 |||||||| |||||||| ||| |||||| ||| | | || ||| || | | Sbjct 1401139 GACTTTGCATGCCTCCTCCACTC---TCACCTCAAGGGTCGTG-CCAGTAAGCAGATGAT 1401194 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 || || |||||||| || ||||| || ||| ||||||||||||| | | || || Sbjct 1401195 CCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACCGAAGCTCTTCC 1401254 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | ||| |||| ||||||||||| ||||||||| ||||||| ||| |||||| | Sbjct 1401255 CTGTG-CCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 1401313 Query 43021 ACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 | | ||||| ||| | ||| || | ||||||| | | |||||||||| Sbjct 1401314 ATCGTCTCCTTGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCCACCAACCCCTTCGAC 1401372 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 ||||||||||||||||| | | |||||||||||||| ||||||||||| || |||||| Sbjct 1401373 TTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 1401432 Query 43140 TACCAG 43145 |||||| Sbjct 1401433 TACCAG 1401438 >seq5 Length=2590615 Score = 313 bits (346), Expect = 5e-80 Identities = 1104/1698 (65%), Gaps = 65/1698 (4%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||| | || || | || |||| || | ||||||||||||||||||||||| | Sbjct 1617691 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 1617750 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 || |||| | | ||||||| || | ||| |||| || | || Sbjct 1617751 CAAGTTTCCAGCCTGCAAAGTGCATGCTGGTGATCTTGCCCATCGTGGG---------GT 1617801 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| || || ||| || |||||| ||| || | ||||| | || || || | Sbjct 1617802 CCTT---CATGTGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAG 1617858 Query 243921 CCATGGTGATGAGGTCCTT---CTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGA 243977 |||| ||| | | ||| |||||| ||||| | | |||||||| | | ||||| Sbjct 1617859 CCATC-TGA--ACGACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGA 1617915 Query 243978 GGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 || | |||| || | |||||||| | || || || | | |||| || | Sbjct 1617916 CGTCGGCAGGGATG--TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTT 1617973 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCAC 244095 ||| |||| |||||| |||| | | || ||| || ||| ||| || Sbjct 1617974 CTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGAC 1618033 Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||| ||||| || | || || ||||| ||||||| ||| | || ||||||| Sbjct 1618034 AACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAA 1618093 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 || ||| |||| ||||| ||||| | || || ||||| ||||| || | | ||||| Sbjct 1618094 GCACTCGTTGTTACCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAG 1618153 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 |||||| | | |||||| ||| || | | || |||| |||| | || | Sbjct 1618154 ACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTCCCAGTC 1618204 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 || ||||||| | |||||| | ||||||||||||||| || | |||| | ||| Sbjct 1618205 CC-AGAGGTCAGAGGGTTTGACGTTCCACATGTCAAACTGGAGGATACCCTCAGAGGCGG 1618263 Query 244335 GGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCG 244393 || |||| | |||| | ||||||||| || || ||||||| || | || | Sbjct 1618264 GGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGGCAGT-G 1618322 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 ||||| |||| || ||||||||||||||| |||||| | || || |||| | | Sbjct 1618323 AGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGAC 1618382 Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513 |||||| || | || | ||| | ||||| || ||||| || || | || ||| Sbjct 1618383 TCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCGAGGCCCTGAACACCCAGACCAATG 1618442 Query 244514 GGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 |||| ||| ||| |||| | || | || | || || ||||| ||| | ||||| Sbjct 1618443 GGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCACATCGAT 1618501 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAAAGTCGT 244631 | |||||| | |||||| | | || | ||| ||| | | || | || ||||||| Sbjct 1618502 GATCTTGTTCAAGTTGCGAATAA-CAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGT 1618560 Query 244632 ACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCA 244691 | | | | || ||| | || ||| | | | || | || ||| | Sbjct 1618561 A---GCAAGCTTCATCGTAGTTGATGA-----AGGAGGGCAGAGACAGAGA----GGCAA 1618608 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 |||||||||| || ||||| || | ||||| || ||| || ||||| ||||| Sbjct 1618609 GGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGG 1618668 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 || |||||| || |||| || || ||| |||| ||| ||||| |||||||||| Sbjct 1618669 AGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGA 1618728 Query 244812 GCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAG 244871 ||||||| || |||||||| |||||| |||| | | || ||| || | | || Sbjct 1618729 GCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAG 1618788 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 |||||| ||| ||||| |||||||||| |||||| |||||| |||||||||| Sbjct 1618789 CCTTGATTGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACT 1618848 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCG 244990 | || || ||| | ||||| |||||| || ||| ||||| || |||| || Sbjct 1618849 CCTCTCCGTAGCAGTCGGCGAGGCCAGGGCAC-TCGTTGGGACACATCAGTGTCCAGTCA 1618907 Query 244991 CCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCC 245050 ||| | | || | || |||||| || || |||||||| ||||| |||| || || Sbjct 1618908 CCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGATCA 1618967 Query 245051 CTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCG 245110 | || | ||| ||| || |||||| | || || | || || ||||| || Sbjct 1618968 CGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCA 1619027 Query 245111 ACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCC 245170 |||||| ||||| | ||||| || | || ||||| ||||||||||| |||||||| Sbjct 1619028 GAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCG 1619087 Query 245171 ACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 | ||| | ||||| |||||||| || || |||| || | || || || Sbjct 1619088 A-CATAC---CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGT 1619143 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGC-CCCTGAGGTTGCTGATGGACATGCCT 245284 |||||||| || |||||| | ||| | || | | | ||| || | | || Sbjct 1619144 ACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGA--CCA 1619201 Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344 | || || || ||||||||| | ||| ||| |||||| || || || ||||| Sbjct 1619202 ATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCA 1619261 Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCAC 245404 || ||||| |||||| | | || ||||| || |||| ||||||| ||| ||| Sbjct 1619262 ATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCG 1619321 Query 245405 GAGTTGAACAGAGTGGGG 245422 | ||||| || |||||| Sbjct 1619322 GCATTGAAGAGCGTGGGG 1619339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337393951280