Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-21 seq31 104 5e-17 >seq7 Length=1585612 Score = 118 bits (130), Expect = 2e-21 Identities = 299/445 (67%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGGAG 243344 || ||||| |||||||||| |||| | ||| ||||| ||||| || | ||| | | | Sbjct 1400986 TCCTTTGCCCAGCGTCTCGTTGCCTTTGC-TGCTGTTGAGGGTAT-CT-TCTTCAGTG-G 1401041 Query 243345 TTTCTGCGCC---ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 | || |||| ||||| ||||| ||| ||| | |||||||| || | | || Sbjct 1401042 TGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTC 1401101 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 |||||| ||||| ||| |||||||| |||||| | || | || | | || Sbjct 1401102 CAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCATGCCTCCTCCACTC 1401161 Query 243462 AAAGCTCCAGAA-CAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTG 243520 | ||| || | || | | | | | | || | | |||||||| || || || Sbjct 1401162 TCACCTCAAGGGTCGTGCCAGTAAGC-AGATGATCCAGGATATCATCACTGATGCCGTCA 1401220 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTG 243580 | || |||| ||| | ||| ||| |||| || || | ||||||||||||| Sbjct 1401221 CCATTGAGCAGGAGTTCCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTG 1401280 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | |||||| |||||||| || ||||| || || || | | |||| ||||| | | Sbjct 1401281 ACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACG 1401340 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 |||| || ||||| ||| |||||||| | |||||||||| ||| || ||| || | Sbjct 1401341 AGAAGGTCTACAAGGCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGCA 1401400 Query 243701 AAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||||||||| |||||||| Sbjct 1401401 AGACCAACTTCTTCGAGAAGCGTGT 1401425 >seq31 Length=392470 Score = 104 bits (114), Expect = 5e-17 Identities = 175/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| | | ||| | || ||| | ||| || ||||| || ||| | |||| | Sbjct 97746 AGTCAATGGTGGTCATCTCAGTATCAGCGGAGTCAAGGTCGTGCTCGACGAAGACAGTCT 97805 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || |||| |||||| ||| ||| |||| ||||||||||| ||| Sbjct 97806 TGACCTCGCTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATAGCGCGCATGAGA 97864 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || |||||||| || | |||||||| ||| | Sbjct 97865 GTGGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGG 97924 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 97925 AGATGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 97984 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 97985 AGATCCTCACC 97995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877838010550