Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq15 93.3 4e-14 >seq7 Length=1585612 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || || || | | Sbjct 344054 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCA 343995 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 343994 AAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 343935 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 343934 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 343875 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 343874 ACGAAAATCTGCAT 343861 Score = 91.5 bits (100), Expect = 1e-13 Identities = 242/365 (66%), Gaps = 21/365 (6%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || ||||| ||| ||||||| | || || || ||||| || || ||||| ||| Sbjct 1401082 ATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGAC 1401141 Query 52542 TTTGCGTGCCTCT---ACT---ACAAGACGCG-CGTGACCGAAAAATTGGATTCGGACAC 52594 ||||| |||||| ||| || | | | |||| | | || | | | Sbjct 1401142 TTTGCATGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGTAA----------GCAGAT 1401191 Query 52595 GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654 ||||| | || ||| || || || | || || ||||||| | || | || || Sbjct 1401192 GATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACCGAAGCTCT 1401251 Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714 || | || || ||||||||| | | |||| ||||||| ||||| || || Sbjct 1401252 TCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGC 1401311 Query 52715 GGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTT 52772 |||||||| | || |||| |||| | | ||| || ||| || ||| || || Sbjct 1401312 TGATCGTCTCCTTGTC--GCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTC 1401369 Query 52773 GAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGC 52832 || |||||| | ||||| || |||| |||||||||||||| ||||||||||| || | | Sbjct 1401370 GACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCC 1401429 Query 52833 GAGTA 52837 || || Sbjct 1401430 GACTA 1401434 >seq15 Length=769536 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||||||||||||| | || || ||| || ||||| || || | | Sbjct 351059 GATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCA 351000 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| || ||||||||||| ||||| || || || ||||| ||| | || | ||| Sbjct 350999 AAGATCAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTAAC 350941 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| |||| |||||| ||||| | || | || || ||||| || || | Sbjct 350940 ATTG-TCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCT 350882 Query 138599 TTAC 138602 | || Sbjct 350881 TGAC 350878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261450898160