Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq7 107 2e-18
seq15 93.3 4e-14
>seq7
Length=1585612
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || || || | |
Sbjct 344054 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCA 343995
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || || || ||||| ||| || || |
Sbjct 343994 AAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 343935
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||||||||| | || | ||| || || || || || ||
Sbjct 343934 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 343875
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 343874 ACGAAAATCTGCAT 343861
Score = 91.5 bits (100), Expect = 1e-13
Identities = 242/365 (66%), Gaps = 21/365 (6%)
Strand=Plus/Plus
Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541
||||| || ||||| ||| ||||||| | || || || ||||| || || ||||| |||
Sbjct 1401082 ATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGAC 1401141
Query 52542 TTTGCGTGCCTCT---ACT---ACAAGACGCG-CGTGACCGAAAAATTGGATTCGGACAC 52594
||||| |||||| ||| || | | | |||| | | || | | |
Sbjct 1401142 TTTGCATGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGTAA----------GCAGAT 1401191
Query 52595 GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654
||||| | || ||| || || || | || || ||||||| | || | || ||
Sbjct 1401192 GATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACCGAAGCTCT 1401251
Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714
|| | || || ||||||||| | | |||| ||||||| ||||| || ||
Sbjct 1401252 TCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGC 1401311
Query 52715 GGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTT 52772
|||||||| | || |||| |||| | | ||| || ||| || ||| || ||
Sbjct 1401312 TGATCGTCTCCTTGTC--GCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTC 1401369
Query 52773 GAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGC 52832
|| |||||| | ||||| || |||| |||||||||||||| ||||||||||| || | |
Sbjct 1401370 GACTTTATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCC 1401429
Query 52833 GAGTA 52837
|| ||
Sbjct 1401430 GACTA 1401434
>seq15
Length=769536
Score = 93.3 bits (102), Expect = 4e-14
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||||||||||||||||||| | || || ||| || ||||| || || | |
Sbjct 351059 GATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCA 351000
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538
|||| || ||||||||||| ||||| || || || ||||| ||| | || | |||
Sbjct 350999 AAGATCAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTAAC 350941
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||| |||| |||||| ||||| | || | || || ||||| || || |
Sbjct 350940 ATTG-TCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCT 350882
Query 138599 TTAC 138602
| ||
Sbjct 350881 TGAC 350878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261450898160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |