Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 172 7e-38 seq7 167 3e-36 seq2 82.4 9e-11 >seq5 Length=2590615 Score = 172 bits (190), Expect = 7e-38 Identities = 1095/1729 (63%), Gaps = 63/1729 (4%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1617691 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 1617750 Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 | | |||||| | | || | ||||| || | |||| | || || | |||| Sbjct 1617751 CAAGTTTCCAGCC-TGCAAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 1617809 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1617810 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1617869 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || | | ||| ||||| ||||| |||| || ||| | || | ||||| Sbjct 1617870 ACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATG 1617929 Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 | || || || || || ||| | || ||| || | | ||||||| | | Sbjct 1617930 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 1617986 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| ||||| || | || |||| | | ||| | |||||||| || Sbjct 1617987 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAA 1618042 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 |||||| ||||| || | | ||||| |||| ||||| ||||| |||||||| || Sbjct 1618043 CTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTT 1618102 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 |||||||| || |||| || ||| || ||||| || || | ||| || ||||| || Sbjct 1618103 GTTACCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACG 1618162 Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || || | | | | | | || || | | |||||||| || | | Sbjct 1618163 GATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGT 1618220 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| ||||||||||||||||| | || || || || |||| || || Sbjct 1618221 TTGACGTTCCACATGTCAAACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTG 1618280 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| |||| | ||||| || |||||| |||||||| Sbjct 1618281 GAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAA 1618337 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 || ||||| || || | || | | |||||| || || || | | ||| Sbjct 1618338 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG- 1618396 Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || |||| ||||| || || ||||| || ||||| || || || | ||| Sbjct 1618397 CAGAGCAAGGAAAGCATCGGCGAGGCCCTGAACACCCAGACCAATGGGTCGGTGGCGCAT 1618456 Query 116292 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||| || ||||| || || || || ||| |||||| | | | || | || Sbjct 1618457 GTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAAGTT 1618516 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 | ||||||| ||| | || | ||| | | | || | || || |||| Sbjct 1618517 GCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAG---CTTC 1618570 Query 116412 ATTG-ACATACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATC 116465 || | | | | | | ||||| | || || || || || |||| | ||| || Sbjct 1618571 ATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTC 1618630 Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525 | || |||||| |||||||| || || | || || || ||||| || | ||| Sbjct 1618631 AGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTT 1618690 Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 |||||| || ||| |||||| ||||||||||||||||| |||| | || ||||| Sbjct 1618691 CTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTC 1618750 Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG--- 116641 || |||| || |||||| || | ||| | | || | | || | | || | | | Sbjct 1618751 AGTCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACC 1618807 Query 116642 CTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCT 116700 || | ||||||| |||||||||| ||| || ||||| ||||| || || ||| || Sbjct 1618808 CTTG-CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCGTAGCAGTCG 1618865 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 | ||| || || || | ||||| | || | ||| | ||| || ||||| ||| Sbjct 1618866 GCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGC 1618925 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820 |||||||| || || |||||||| || || ||| ||||| || || | || || Sbjct 1618926 TTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGATCACGGGCACGGACCTCCTCC 1618985 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || ||| | || | || || | || ||| | |||||| || || ||| Sbjct 1618986 TTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGG 1619045 Query 116881 TACACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGC 116936 || | || | | ||| | || | | ||| |||||| ||||||| || || Sbjct 1619046 TAGATGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATACCGAGCAGTGTT 1619104 Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATA 116994 ||| || || |||||||| |||| | ||||| ||| || || || || ||| || Sbjct 1619105 GTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTA 1619164 Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 ||| | | || | | | ||| | | | ||||||||| || ||| ||| ||| Sbjct 1619165 TGAGCC--AGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAG 1619222 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || || || | ||||| | ||||||| || || || ||| |||| | | Sbjct 1619223 ATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCA 1619282 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 | | |||||| |||| ||| ||| || || || || |||||||| || || | Sbjct 1619283 ACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAA 1619342 Query 117175 GCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGAC 117221 || || ||| | | |||| |||||| || ||| ||||||||||| Sbjct 1619343 GCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 1619389 >seq7 Length=1585612 Score = 167 bits (184), Expect = 3e-36 Identities = 314/459 (68%), Gaps = 16/459 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 1401435 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 1401376 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 ||| || || ||||| | | || | | | |||| |||| ||| Sbjct 1401375 AAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGG 1401321 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| |||| Sbjct 1401320 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 1401261 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || || || || |||| ||| ||||||| || || || | ||| Sbjct 1401260 GCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 1401201 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 1401200 TCCTGGATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAT-GCA 1401144 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||||||||| |||||||| || || ||||| |||||| ||| Sbjct 1401143 AAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGC 1401084 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 1401083 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 1401024 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 || ||| || || |||| ||||||| |||||||||| Sbjct 1401023 TCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG 1400985 >seq2 Length=4950538 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 177742 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 177801 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 3137822 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 3137763 Query 177802 TGTACTCGTGAGAAGGTGACCAAAGGTAAGTTCTGGATTCCAAATACCCTCCTTTTCGTG 177861 | || || | || || |||||| |||| || ||| | | || |||||||||||| Sbjct 3137762 GGAACCCGCCAACAGATGTCCAAAGATAAGCTCGGGAATGTAGATCTTCTCCTTTTCGTG 3137703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506026667480