Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq15 136 9e-27
seq7 129 1e-24
>seq15
Length=769536
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || || ||||| ||||| |||||||| |||| ||||||||| ||| ||
Sbjct 351542 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 351483
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| |||||| || |||||||| ||||| ||||| || || || ||
Sbjct 351482 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGCTGATCGGGGGGGATGCCC 351423
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| |||| ||||| | | ||| || || |
Sbjct 351422 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGATTCAACCTCAAGG 351363
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || ||||| ||||| || || ||
Sbjct 351362 GTGATGGTCTTTCCAGTAAGAGTCTTCACGAAGATCTG 351325
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||||||||| || ||||| |||| ||||||||| | | |||
Sbjct 351314 CGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTT 351255
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || ||||| || ||||||||||| ||||| || |||||| ||| ||
Sbjct 351254 CGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGAGGAATACCC 351195
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| |||||| || | ||| || | || || || ||||
Sbjct 351194 TCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGA 351135
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || || || |||||
Sbjct 351134 GTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTG 351097
Score = 104 bits (114), Expect = 6e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || |||||||| || |||||||| | ||||||||| || | || | || |||
Sbjct 351077 AGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 351018
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || |||||||| || ||||| || ||||| ||||| ||| || || || |||
Sbjct 351017 TCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCC 350958
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || |||| ||| || | | || || || | ||||| |||
Sbjct 350957 TGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTC 350898
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || ||||| || || ||
Sbjct 350897 TTGCCAGTGAGGGTCTTGAC 350878
Score = 100 bits (110), Expect = 7e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
||||||||||| || ||||||||||||||||| | || ||| ||| |||||| |||||
Sbjct 351448 CTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAACATCCAG 351507
Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
|| ||||| ||||||||||| ||| | |||||||
Sbjct 351508 AAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCG 351542
Score = 84.2 bits (92), Expect = 5e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| ||||| || ||||| |||||||| || | |||||| |||| | ||| | || ||
Sbjct 350795 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 350736
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| |||||||| || | || |||||||| || || || || |||
Sbjct 350735 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 350676
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| || | ||||| | | || || || | ||||| |||
Sbjct 350675 TGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 350616
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || || || || ||
Sbjct 350615 TTGCCGGTCAAGGTCTTGACGAAGATCTG 350587
>seq7
Length=1585612
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| || |||||||| |||| ||||||||| || || | |||||
Sbjct 344072 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 344013
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || |||||||| ||||||||||| || || || || |||
Sbjct 344012 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 343953
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || || | |||||||||
Sbjct 343952 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 343893
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || || ||||| ||
Sbjct 343892 TTCCCCGTGAGGGTCTTGACGAAAATCTG 343864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178919288945251
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |