Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq7 178 1e-39
seq46 114 1e-20
seq15 109 5e-19
>seq7
Length=1585612
Score = 178 bits (196), Expect = 1e-39
Identities = 545/830 (66%), Gaps = 27/830 (3%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | |||||| || |||||||||
Sbjct 1401419 TTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTG 1401360
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | |||||| ||| | |||| | || |||| || || | || || ||||||
Sbjct 1401359 GTGGCCTTGTAGACCTTCTCGTTGCCAAG-AG--CGACAAGGAGACGATCAGCGACGAAC 1401303
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTC 132800
|| ||||| ||| |||| || | || | || || || |||| || | | |||||
Sbjct 1401302 TCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG-GCACAGGGAAGAGCTTC 1401244
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGC-GC-- 132857
|||||| || ||||| |||| ||| || || |||| ||| ||| | | ||
Sbjct 1401243 GGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATCTGCTT 1401184
Query 132858 -CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916
| || || || ||| | || | | | ||| |||||||| || | |
Sbjct 1401183 ACTGGCACGACCCTTG----AGGTGAGAGTGGAGGAGGCATGCAAAGTCAGTGTGAAGAC 1401128
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
||||||| | || ||||| |||||| |||||||| || |||||||| || || || |
Sbjct 1401127 CCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACGCTTCT 1401068
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
||||||| || || | |||||| || ||||||| ||||| || || || || |
Sbjct 1401067 TGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCAAAGG 1401008
Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTC 133094
| || || |||| | | || | || || || |||| ||||| || | ||||| ||
Sbjct 1401007 CAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGG--ATCCATCGGATGGCCCAGTC 1400950
Query 133095 GGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTC 133154
||||| | | || ||| || || || || |||||||| || | | || ||| ||
Sbjct 1400949 AGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGAT--AGGTTCGCTGG 1400892
Query 133155 CGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212
|| | | ||| |||||||| ||| || || | || || || | |||||||
Sbjct 1400891 GCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGTCTCGGAATGAATGTTCTCC 1400832
Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272
|| ||| || |||||||| ||||| || ||||| | ||| || || | |||
Sbjct 1400831 ATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCACCACTGAAT 1400772
Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332
|||||||| || || ||||||||||| || || ||| ||||| || || || | |||
Sbjct 1400771 CGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGATGTGA 1400712
Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGAC 133389
|| || |||| | | | | ||| | ||||||| | ||||||||
Sbjct 1400711 GAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCTTGGAG 1400652
Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| || | |||||| | ||||| || || ||||| || || ||||||||
Sbjct 1400651 AGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 1400602
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 343858 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 343917
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| || ||| ||||
Sbjct 343918 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 343976
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| ||||| | || ||||| ||||| || || | |||||||| | ||||||
Sbjct 343977 CCAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 344036
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| | || || || |||| || ||
Sbjct 344037 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 344075
>seq46
Length=180214
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | |
Sbjct 93232 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 93291
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||||||||| ||
Sbjct 93292 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACTG 93351
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || || | || || ||| ||||||||||||||| |||
Sbjct 93352 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 93411
Query 38433 G 38433
|
Sbjct 93412 G 93412
>seq15
Length=769536
Score = 109 bits (120), Expect = 5e-19
Identities = 157/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || ||||| || | || |||||| | ||
Sbjct 351094 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 351153
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | || | | |||| || |||| ||||| ||||| ||||| | || |
Sbjct 351154 GATACCATTGATAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 351211
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| ||||| | ||| ||||| || || || || | || || || ||||||||
Sbjct 351212 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACA 351271
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| |||||| | || || || ||||| || |||
Sbjct 351272 ACATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGT 351309
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309
||| |||| || || ||||| ||||| ||||||||| | || || ||| | |||| | |
Sbjct 350872 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACC 350931
Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | | |||| || || | ||||| ||||| || || | |||||||||||
Sbjct 350932 ATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAACAGCGC 350991
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| || | || || || || || || |||| || ||||| |||||||||||| |||
Sbjct 350992 CTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAA 351051
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| | || || ||| | || || ||
Sbjct 351052 AAGGAATCCACTCTCCATCTCGTCCTCCG 351080
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || ||||||||| | || || || |||
Sbjct 351322 ATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTTGAATCCAGT 351381
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | |||| | |||| || || | ||||| ||||| || ||| |||| |
Sbjct 351382 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATC 351439
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || || || | ||| || || ||| |||| || | |||||| | | ||||||||
Sbjct 351440 AGCAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACA 351499
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||||| ||||| | || || || | || || || | | |||||||
Sbjct 351500 ACATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCC 351550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171843419520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |