Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 178 1e-39 seq46 114 1e-20 seq15 109 5e-19 >seq7 Length=1585612 Score = 178 bits (196), Expect = 1e-39 Identities = 545/830 (66%), Gaps = 27/830 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | |||||| || ||||||||| Sbjct 1401419 TTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTG 1401360 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| ||| | |||| | || |||| || || | || || |||||| Sbjct 1401359 GTGGCCTTGTAGACCTTCTCGTTGCCAAG-AG--CGACAAGGAGACGATCAGCGACGAAC 1401303 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTC 132800 || ||||| ||| |||| || | || | || || || |||| || | | ||||| Sbjct 1401302 TCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG-GCACAGGGAAGAGCTTC 1401244 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGC-GC-- 132857 |||||| || ||||| |||| ||| || || |||| ||| ||| | | || Sbjct 1401243 GGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATCTGCTT 1401184 Query 132858 -CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916 | || || || ||| | || | | | ||| |||||||| || | | Sbjct 1401183 ACTGGCACGACCCTTG----AGGTGAGAGTGGAGGAGGCATGCAAAGTCAGTGTGAAGAC 1401128 Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | || ||||| |||||| |||||||| || |||||||| || || || | Sbjct 1401127 CCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACCACGCTTCT 1401068 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || || | |||||| || ||||||| ||||| || || || || | Sbjct 1401067 TGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCAAAGG 1401008 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTC 133094 | || || |||| | | || | || || || |||| ||||| || | ||||| || Sbjct 1401007 CAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGG--ATCCATCGGATGGCCCAGTC 1400950 Query 133095 GGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTC 133154 ||||| | | || ||| || || || || |||||||| || | | || ||| || Sbjct 1400949 AGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGAT--AGGTTCGCTGG 1400892 Query 133155 CGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 || | | ||| |||||||| ||| || || | || || || | ||||||| Sbjct 1400891 GCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGTCTCGGAATGAATGTTCTCC 1400832 Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272 || ||| || |||||||| ||||| || ||||| | ||| || || | ||| Sbjct 1400831 ATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCACCACTGAAT 1400772 Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332 |||||||| || || ||||||||||| || || ||| ||||| || || || | ||| Sbjct 1400771 CGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGATGTGA 1400712 Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGAC 133389 || || |||| | | | | ||| | ||||||| | |||||||| Sbjct 1400711 GAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCTTGGAG 1400652 Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || | |||||| | ||||| || || ||||| || || |||||||| Sbjct 1400651 AGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 1400602 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 343858 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 343917 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| |||| Sbjct 343918 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 343976 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| ||||| || || | |||||||| | |||||| Sbjct 343977 CCAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 344036 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| || || Sbjct 344037 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 344075 >seq46 Length=180214 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 93232 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 93291 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 93292 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACTG 93351 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 93352 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 93411 Query 38433 G 38433 | Sbjct 93412 G 93412 >seq15 Length=769536 Score = 109 bits (120), Expect = 5e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || ||||| || | || |||||| | || Sbjct 351094 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 351153 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || |||| ||||| ||||| ||||| | || | Sbjct 351154 GATACCATTGATAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 351211 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| ||||| || || || || | || || || |||||||| Sbjct 351212 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACA 351271 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | || || || ||||| || ||| Sbjct 351272 ACATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGT 351309 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 ||| |||| || || ||||| ||||| ||||||||| | || || ||| | |||| | | Sbjct 350872 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACC 350931 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | |||| || || | ||||| ||||| || || | ||||||||||| Sbjct 350932 ATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAACAGCGC 350991 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | || || || || || || |||| || ||||| |||||||||||| ||| Sbjct 350992 CTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAA 351051 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| | || || ||| | || || || Sbjct 351052 AAGGAATCCACTCTCCATCTCGTCCTCCG 351080 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || || ||| Sbjct 351322 ATGCAGATCTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTTGAATCCAGT 351381 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | ||||| ||||| || ||| |||| | Sbjct 351382 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCCGATC 351439 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| || || ||| |||| || | |||||| | | |||||||| Sbjct 351440 AGCAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACA 351499 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | || || || | || || || | | ||||||| Sbjct 351500 ACATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCC 351550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171843419520