Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 219 5e-52 seq2 93.3 5e-14 seq4 86.0 8e-12 >seq1 Length=6144005 Score = 219 bits (242), Expect = 5e-52 Identities = 461/682 (68%), Gaps = 14/682 (2%) Strand=Plus/Plus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| |||||||| || ||||| | | |||||| | || | ||||| || || Sbjct 3800581 CTTGTGTTTACGCTTGAACTCGTTAACGAAGTGGTTGACCAGACGGTTGTCGAAGTCCTC 3800640 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || ||||| | ||||| || |||||||| | |||||| | Sbjct 3800641 ACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 3800700 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | || ||||| || ||||||||||| || || || || || ||||| ||| | Sbjct 3800701 AAGGAGAGACACATCGAAGGTACCACCACCAAGATCGAAGATCAGGACGTTGCGCTCGCC 3800760 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| || |||||||| || || || || || || || || || || || || Sbjct 3800761 CTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTAGGCTCGTTGATGATTCG 3800820 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| || || || || | ||||| || || ||||| || || || ||||| Sbjct 3800821 GAGAACGTTAAGACCGGCGATGAGACCAGCATCCTTGGTGGCTTGACGCTGAGAGTCGTT 3800880 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| ||||| || || || |||| |||| ||| || || || || || || Sbjct 3800881 GAAGTAGGCAGGGACAGTCACAACAGCGTTGTTGACAGTCTCGCCAAGGTAAGACTCAGC 3800940 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCG 7826 | | || ||| ||||| || | ||| | || ||||| |||| || | || || | Sbjct 3800941 GGTCTCGCGCATCTTGGTGAGGATCATAGCAGAGATCTCCTCAG-GGCTGAAGGTCTTGG 3800999 Query 7827 TTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC---GGGGATAACCT 7883 | || || || || || || || || ||||| || || |||| | || | || Sbjct 3801000 TCTCGCCCTTGAACTCGACCTCGATGATGGGCTT----GC--CACCCTTGTCGACGATCT 3801053 Query 7884 TATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAA 7943 | | | ||| ||||||||| | || |||| || | ||||| | ||||| | Sbjct 3801054 TGAAGGGGAAATGCTTCATATCGGCCTGAACCTCAGCATCGGCGAACTTGCGACCGATCA 3801113 Query 7944 GACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGT 8003 ||||| || || || || ||||| | |||||||| || ||||||||| || || | Sbjct 3801114 ATCGCTTGGCGTCGAAGACAGTGTTCTGAGGGTTCATAGCGACTTGGTTCTTGGCGGCAT 3801173 Query 8004 CCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCC 8063 | || || ||||| || | || || || ||||| | || ||||| ||||| || | Sbjct 3801174 CACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTCGGTTAC 3801230 Query 8064 CTTGGTCGTTCGCAATAATTTC 8085 | |||||||| || || || || Sbjct 3801231 CCTGGTCGTTGGCGATGATATC 3801252 >seq2 Length=4950538 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 1871468 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 1871409 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 1871408 GTCATCAATGGAGAGAAGAGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 1871352 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 1871351 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 1871293 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 1871292 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 1871233 Query 7695 GTTG 7698 | || Sbjct 1871232 GCTG 1871229 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || | Sbjct 1871170 CGTTGAAGTAGGCAGGGACGGTAACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 1871111 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| ||||||||| | || ||||| || | | |||||| | Sbjct 1871110 CAGCGACCTCCTTCATCTTGCCAAGAACCATGGCAGAGATCTCCTCGGGAGTAAACTGCT 1871051 Query 7824 TC 7825 || Sbjct 1871050 TC 1871049 >seq4 Length=2598818 Score = 86.0 bits (94), Expect = 8e-12 Identities = 192/283 (68%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGA 22549 ||||||||| || | || |||| |||| |||||||||| || | || ||| Sbjct 69502 CTCCACAAACAGAGGAGACCACGTTCCACCCAGTATCACCATATGCTGTTACCAAGTTGT 69443 Query 22550 TGGGATATTGGGCGACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTA 22609 | ||| ||| | || || |||| |||||| ||||||| | ||| | ||||||| Sbjct 69442 TCCAATACTGGACCACTGTCAATTTTAGAGAGGCATACGGCTTCCATGCCTCGAATGGTA 69383 Query 22610 TAATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAAC-A 22668 | | |||||||| |||||||| ||||| ||| | ||||| || ||||| || || | Sbjct 69382 TTCTCTTCAACCATGAATCACCAAGACGTGGTACTACTTTCGTCACCCGAAAGATCACTA 69323 Query 22669 CTCG-GTGTCGCTAATATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGA 22727 ||| || | |||| | ||| || || | | | | || | ||| || || |||| Sbjct 69322 CTCAAGTAGCTTTAATTGCT-TGC-GGAAAGCTAGACTTCTTCTCCCTGGGCAATTTAGA 69265 Query 22728 TGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAATGT 22770 || ||||||||||| |||||| |||||| || || || Sbjct 69264 CGCTGTCCGAGATTGGGGCCATGCAAAGGATTACATGCAAGGT 69222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131585308520