Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 154 2e-32 seq1 105 8e-18 >seq7 Length=1585612 Score = 154 bits (170), Expect = 2e-32 Identities = 354/522 (68%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||||||||| ||| | |||||||| |||||| | |||| ||||| | | ||| | Sbjct 1400629 TGGACTGCTGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACT 1400688 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 | |||| || || | ||||||| || ||||| |||| || ||||| || Sbjct 1400689 GCTGATGAGCAGTTCTTTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATC 1400748 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| || | || || |||||| || |||| |||| || | | Sbjct 1400749 GTCAACGAGAACCTCGTCGAGCGATTCAGTGGTGAGGTCCAGATCC-CTGAGGCTCGTTG 1400807 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | | || | |||| ||| | | | ||| ||||| ||| || | Sbjct 1400808 CTTCTACGGCT-TCCAGATCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTTA 1400866 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 102110 | |||| || || ||||| || || ||| | | ||||| | ||||| | || Sbjct 1400867 TCGACACATACATCAAGGAGCCCGCCCAGC-GAACCTATCTCTTCAACGCCATTGAGACC 1400925 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCG 102169 |||| || || | |||||| || || ||||| || ||| | | | || | | | Sbjct 1400926 ATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCC 1400985 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 | ||||||| |||| ||| | || ||||| ||||||||||||||||||| |||| | Sbjct 1400986 T-CCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGC 1401044 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 |||| | |||| | |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 1401045 CTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAA 1401104 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| ||||||||||||||||| || ||| || ||||| Sbjct 1401105 CGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGC 1401146 >seq1 Length=6144005 Score = 105 bits (116), Expect = 8e-18 Identities = 244/359 (68%), Gaps = 13/359 (4%) Strand=Plus/Plus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATG-CATGG---TTGATTTTCGCGAGCGA 16113 ||| | |||||||| || || ||||| || ||| || || ||| |||| || || | Sbjct 755780 TCCAATGGCATCAAGTTCGTCGATGAAAACAATGGCAGGGGACTTGCTTTTGGCC-GC-A 755837 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | ||||| || || || |||||||| || ||||||||||| ||||| |||| | | Sbjct 755838 GTG--AAGAGGTCACGGACTCGCTTGGCACCAACACCAACAAAGATCTCGTCAAA-CTCG 755894 Query 16174 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | |||| | || ||||||||| || ||| || |||| ||||| || ||||| Sbjct 755895 CTACCAGACATGTAGAAAAAGGGGACACCAGCTTCGCCAGCAACAGCTCGAGCAAGAAGC 755954 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 16292 |||||||| ||||| || ||| | |||||| |||| || | || || ||| Sbjct 755955 GTCTTACCAGTACCAGGAGGACCGACTAGGAGGACACCCTTGGGCAGTTTAGCACCAAGA 756014 Query 16293 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 16352 | | | | || || | ||| ||||| || |||| |||| | || |||||||| Sbjct 756015 TCGCTGAACTTTTCGGGATTCTTCAGAAACTCGACAACTTCTTGGAGCTCCTCTTTGGCT 756074 Query 16353 GCGTCAATCCCCTCAACATCGGTAAACCGAGTTTCAATTTCTTGTTCGGCATTGAACTC 16411 | ||| || | ||||||| | |||||||| | ||| | ||| || |||| ||| Sbjct 756075 TCATCACAGCCATGAACATCGTTGAACCGAGT---ATTTTGCTTTTCCGCCTTGACCTC 756130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741212830160