Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq5 230 3e-55
seq1 89.7 6e-13
>seq5
Length=2590615
Score = 230 bits (254), Expect = 3e-55
Identities = 1024/1600 (64%), Gaps = 59/1600 (4%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| ||||| |||||||| ||||| ||| |||||||| ||||| | | ||
Sbjct 1617815 GTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGA---- 1617870
Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615
| | ||| | | ||||||||||||||||||| | ||||| || | || ||||
Sbjct 1617871 CCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCGGCAGGGATGT 1617930
Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672
||||| ||||| || ||| |||| | | || | | |||||| | | |
Sbjct 1617931 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 1617987
Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729
|||| ||||| | | | || | ||| || || | ||||| || || |
Sbjct 1617988 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 1618044
Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789
||||||| || || || ||||||| || | |||||||| ||||| ||||| ||||
Sbjct 1618045 CACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 1618104
Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849
| || || || || | || || || ||||| ||||| | ||| |||||||| ||||
Sbjct 1618105 TACCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 1618164
Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909
|| | ||||| || ||| || | | ||||| || | | || |||
Sbjct 1618165 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGTTTGA 1618224
Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969
| | |||||| || || || | |||||||| || || |||||||||||
Sbjct 1618225 ------CGTTCCACATGTCAAACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGG 1618278
Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028
| ||| | ||||| ||| |||| || | | | || | | || || || |||||
Sbjct 1618279 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAA 1618337
Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085
|| ||||| || || || || |||| |||| ||| | |||||||| | |
Sbjct 1618338 ATGGTCTCGAAGATCTGC---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATA 1618394
Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144
| || || || || |||| || || ||||||||||| ||||||||||| || ||
Sbjct 1618395 CG-CAGAGCAAGGAAAGCATCGGCGAGGCCCTGAACACCCAGACCAATGGGTCGGTGGCG 1618453
Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204
||||||| | ||||| | || ||||| ||| ||||||| | || |
Sbjct 1618454 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAA 1618513
Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264
|| | ||| || ||| | || | || | | | ||| | | | ||
Sbjct 1618514 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA-GCAAGCTTCAT 1618572
Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323
| || |||| | ||| |||| | ||| ||||| ||||| |||| ||||||
Sbjct 1618573 CGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 1618632
Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383
| ||| || | |||||| || || | |||||| || ||| ||| | |||||
Sbjct 1618633 GAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 1618692
Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443
| || || ||| ||| || |||||||| ||||||||| ||||| | || || || |
Sbjct 1618693 TTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 1618752
Query 110444 TCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGA 110500
|||| | || ||||||||| | ||| | | || | | | | | || |||| | |
Sbjct 1618753 TCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAGCCTTG-ATTGTCTTGCG--ACCCT 1618809
Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560
|| |||| ||||||||| ||||| |||| || |||| |||||| || | |
Sbjct 1618810 TGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGA 1618869
Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620
| || || || |||||| | || | ||| | || || ||||| | |||||
Sbjct 1618870 GGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCA 1618929
Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680
|||| || ||||| ||||| | || |||||| |||||| ||| |||| || | ||
Sbjct 1618930 TGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTAC 1618989
Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740
| ||||| || || || | || || | || ||| |||||||| || ||||| ||||
Sbjct 1618990 CGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGA 1619049
Query 110741 CAGCGAT------GGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794
|| | || || ||| | |||| |||| ||||| || || ||| |
Sbjct 1619050 TGGCAAAAGCACCGGGTCGCTTGTTGCCACCC---TGGTCGACATACCGAGCAGTGTTGT 1619106
Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854
||||||| | |||||||||| || |||| ||| ||| || ||||| || |
Sbjct 1619107 TGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATG 1619166
Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914
| | | |||||||| ||| | || | |||||||||||| ||| ||| ||
Sbjct 1619167 AGCCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAGATCA 1619226
Query 110915 GTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973
||||| ||| |||| ||| | || || || ||||| || |||| | |||
Sbjct 1619227 TGGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACC 1619285
Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033
| |||||||| |||| || || |||| || || ||||||||||| || || | |||
Sbjct 1619286 AAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCA 1619345
Query 111034 TGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071
|| ||| ||| |||| |||||| |||||||| ||
Sbjct 1619346 TGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTC 1619383
>seq1
Length=6144005
Score = 89.7 bits (98), Expect = 6e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539
|||| || | || ||||| || ||| ||||| ||||| | || || || || |
Sbjct 2285681 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 2285740
Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599
| ||||||||| | ||||| ||| ||||||| ||| | |||||||| ||| ||
Sbjct 2285741 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 2285800
Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651
||||||||||| ||| | || || ||||| || || ||||||||||| ||
Sbjct 2285801 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCG 2285852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588974873583400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |