Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq5 224 1e-53
seq7 131 2e-25
seq1 96.9 4e-15
>seq5
Length=2590615
Score = 224 bits (248), Expect = 1e-53
Identities = 1140/1783 (64%), Gaps = 57/1783 (3%)
Strand=Plus/Plus
Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610
|||| | |||||||||| || || |||| | || || |||||||| ||||||
Sbjct 1617684 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 1617743
Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669
||||| || ||||||| || | || | ||||| | || |||| |||||| ||
Sbjct 1617744 TTGAGGCCAAGTTTCCA-GCCTGCAAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTC 1617802
Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727
| |||| | |||| ||| |||| | ||||||||| ||| || | || |||
Sbjct 1617803 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1617860
Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787
|| | || ||| | | ||| ||||| || || ||| ||| ||||| ||
Sbjct 1617861 ATCTGAACGACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACGTCG 1617920
Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844
| ||||| | | || || ||||| ||||| | | || ||| || | | ||||
Sbjct 1617921 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 1617977
Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904
||| | | |||||| ||||| || | || || |||| || |||||||| |
Sbjct 1617978 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 1618037
Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964
||||| || ||||| | | | ||||| || | |||||||| || |||||
Sbjct 1618038 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 1618097
Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024
|| || ||||||| || || | ||| ||| || ||||| || || | | ||||||
Sbjct 1618098 TCGTTGTTACCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1618157
Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 106079
||||| | || | | ||||| ||||| ||| | |||||||| || | |
Sbjct 1618158 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 1618214
Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139
| ||||| || |||| |||| ||||| || || | || | || | ||| |||||||
Sbjct 1618215 GAG-GGTTTGACGTTCC-ACATGTCAAACTGGAGGATACCCTCAGAGGCGGGGGAACCCT 1618272
Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 106198
|| || |||| ||| | | | ||||| | ||| | || |||| |||
Sbjct 1618273 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 1618331
Query 106199 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 106258
||||| ||||| || ||||| | || | ||| || || ||| || || | |
Sbjct 1618332 TGATAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGG-G 1618390
Query 106259 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317
| ||| | || || |||| ||||| || |||||||||| |||||| |||| |||
Sbjct 1618391 CATACGCAGAGCAAGGAAAGCATCGGCGAGGCCCTGAACACCCAGACCAATGGGTCGGTG 1618450
Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 106377
||||| ||| || || || || || || || || || |||| |||
Sbjct 1618451 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 1618510
Query 106378 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 106436
| || |||||| || ||| | || || || || | | || | || ||
Sbjct 1618511 CAAGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAG 1618566
Query 106437 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493
|| || | ||| | || || | | || || | ||||| ||||| ||
Sbjct 1618567 CTTCATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCT 1618626
Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553
| || | | |||||| | |||||| || || | |||||| || || || || |
Sbjct 1618627 CGTCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGA 1618686
Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613
||||||||||| ||||| ||| || |||||||||||||||||| | || | || |
Sbjct 1618687 GGTTCTTTTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 1618746
Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG 106672
|||| ||||| | || |||||| || | ||| | | || | | || | | || | |
Sbjct 1618747 TCTCAGTCTGGGCCTCGAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGC 1618803
Query 106673 GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 106730
| || | |||||| |||||||||| ||| || || || |||||||| || ||
Sbjct 1618804 GACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGT 1618863
Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCC 106790
||| ||| || || || || ||||| | || | ||| | ||| || ||||| |
Sbjct 1618864 CGGCGAGGCCAGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAACAC 1618923
Query 106791 GCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCT 106847
||||||||||||| || || ||||| ||| || |||| ||||| | ||| || |||
Sbjct 1618924 GCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGATCACGGGCACGGA-CCT 1618980
Query 106848 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907
| || | ||| ||||| || | |||||||| || | || ||| | |||||| ||||
Sbjct 1618981 CCTCCTTACCGTGGTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCT 1619040
Query 106908 CAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTG 106964
| || |||| || | || || ||| ||| | || | ||||| || || |
Sbjct 1619041 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAG 1619100
Query 106965 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA 107023
|| ||| || || |||||||| |||| || ||||| ||| ||| || || || |||
Sbjct 1619101 TGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGA 1619160
Query 107024 -ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT 107082
|| ||| | | || | | | || | | | |||||||| |||||| |||
Sbjct 1619161 TGTATGAG--CCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTT 1619218
Query 107083 TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTT 107142
||||| ||||| | | ||||| | ||||| || | || ||| ||||| |
Sbjct 1619219 GGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCAT 1619278
Query 107143 GGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGG 107202
| | | ||||||| |||| || || || || || ||||||||||| || ||
Sbjct 1619279 ATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGG 1619338
Query 107203 TGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCA 107260
| || || ||| | | |||| |||||| | ||||||||||||||| ||
Sbjct 1619339 GGAAGCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCG 1619396
Query 107261 ATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303
|| || || || ||| || | | ||||||||| | |||||
Sbjct 1619397 ATATCATCACCCCAGATACCAACAGACACACGCATGATCATGT 1619439
>seq7
Length=1585612
Score = 131 bits (144), Expect = 2e-25
Identities = 334/503 (66%), Gaps = 18/503 (4%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| |||| |||||||| |||||||||||||| ||| ||||| ||||| ||||||
Sbjct 1401434 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATA 1401375
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 117100
||||| || || || | || || | | | | || |||| ||||
Sbjct 1401374 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 1401320
Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160
||||||| | || |||||||||||| ||| ||||||||||| |||| |||
Sbjct 1401319 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 1401260
Query 117161 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220
||| || || || || || |||| | | |||||| || || || | | |||
Sbjct 1401259 CACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 1401200
Query 117221 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 117277
| ||||| | | || ||| | | || | || | || ||| || | |||
Sbjct 1401199 CCTGGATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CATG-CAA 1401143
Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337
| || ||| |||||||| || || || || || || || ||||| || || ||||
Sbjct 1401142 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCA 1401083
Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397
||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||||
Sbjct 1401082 TGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCT 1401023
Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCAT 117456
| ||| ||||| |||| || |||| ||| |||||| ||| | || | | | ||||
Sbjct 1401022 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 1400964
Query 117457 TTCATTGCCCATTTCGCCTTCTT 117479
|| ||||| | ||||||||
Sbjct 1400963 CGGATGGCCCAGTCAGCCTTCTT 1400941
>seq1
Length=6144005
Score = 96.9 bits (106), Expect = 4e-15
Identities = 240/359 (67%), Gaps = 13/359 (4%)
Strand=Plus/Plus
Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATA-CATGG---TTGATTTTCGCGGGCGA 9420
||| | |||||||| || || ||||| ||||| || || ||| |||| || | |
Sbjct 755780 TCCAATGGCATCAAGTTCGTCGATGAAAACAATGGCAGGGGACTTGCTTTTGGCCGCAGT 755839
Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480
||||| || || || | ||||| || ||||||||||| ||||| |||| | |
Sbjct 755840 G----AAGAGGTCACGGACTCGCTTGGCACCAACACCAACAAAGATCTCGTCAAA-CTCG 755894
Query 9481 CGGCGGAACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9539
| | |||| | || ||||||||| || ||| || |||| ||||| || |||||
Sbjct 755895 CTACCAGACATGTAGAAAAAGGGGACACCAGCTTCGCCAGCAACAGCTCGAGCAAGAAGC 755954
Query 9540 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTT 9599
|||||||| ||||| || ||| | |||||| ||||| || | || || |||
Sbjct 755955 GTCTTACCAGTACCAGGAGGACCGACTAGGAGGACACCCTTGGGCAGTTTAGCACCAAGA 756014
Query 9600 CCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 9659
| | | | || || | ||| ||||| || |||| |||| | || ||||||||
Sbjct 756015 TCGCTGAACTTTTCGGGATTCTTCAGAAACTCGACAACTTCTTGGAGCTCCTCTTTGGCT 756074
Query 9660 GCGTCAATCCCCTCAACATCGGTAAACCGGGTTTCAATTTCTTGTTCGGCATTGAACTC 9718
| ||| || | ||||||| | ||||| || | ||| | ||| || |||| |||
Sbjct 756075 TCATCACAGCCATGAACATCGTTGAACCGAGT---ATTTTGCTTTTCCGCCTTGACCTC 756130
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104
|||| || |||| || ||||| ||||| ||| |||||| ||| | || || |
Sbjct 2285681 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCCAAGCATTTCATTGACACAGGCGCTG 2285740
Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164
|||| || ||| |||| || ||| ||||||| ||| | |||||||| || ||
Sbjct 2285741 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 2285800
Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217
||||||||||| ||| |||| || ||||| || |||||||| || ||||||
Sbjct 2285801 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 2285853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589979671661720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |