Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq15 102 5e-17
seq46 86.0 4e-12
>seq15
Length=769536
Score = 102 bits (112), Expect = 5e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
|| ||||| ||||| ||||| | |||| | || |||| |||| ||| || || || ||
Sbjct 351512 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAACTGCTTACCAGCGAA 351454
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || |||||||| || | || | ||||||||||| |||||| || |||
Sbjct 351453 GATAAGACGTTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 351394
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | |||| || ||||| || | ||| ||||| ||||| || |||||||||||
Sbjct 351393 GTCGATAGTGTCACTGGATTCAACCTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTCAC 351334
Query 34970 AAAGATCTGCATA 34982
||||||||||||
Sbjct 351333 GAAGATCTGCATA 351321
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| || || || || | || | || || ||||| || ||||| ||
Sbjct 350774 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 350715
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||||||||| | || | ||||||||||| |||||| ||||||
Sbjct 350714 ATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 350655
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| |||| ||| ||||| || || || | ||||| ||
Sbjct 350654 TCAATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACG 350595
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 350594 AAGATCTGCAT 350584
Score = 82.4 bits (90), Expect = 5e-11
Identities = 130/185 (70%), Gaps = 10/185 (5%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| || |||||||| ||||| | |||| |||| | || || || || ||||| |||||
Sbjct 351057 TTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 350998
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906
|| || || || ||||| | || | ||||||||||| ||||||| || ||
Sbjct 350997 GATCAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATT 350938
Query 34907 --GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
|||| ||||| || | |||||| || | ||| ||||| || || ||||| |||
Sbjct 350937 GTCGATGGTATCG---GAC--GACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 350883
Query 34965 TTCAC 34969
|| ||
Sbjct 350882 TTGAC 350878
>seq46
Length=180214
Score = 86.0 bits (94), Expect = 4e-12
Identities = 130/183 (71%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| || || |||| |||| || ||||| || || || || ||
Sbjct 93410 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 93351
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
||||| || ||||| | || | |||||||||||| ||||| ||||| || |
Sbjct 93350 AGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 93295
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || || ||| || |||| ||| ||||| || ||||| || ||||||||
Sbjct 93294 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 93235
Query 34970 AAA 34972
||
Sbjct 93234 GAA 93232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324632994659784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |