Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 >seq7 Length=1585612 Score = 114 bits (126), Expect = 1e-20 Identities = 362/558 (65%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 |||||||| ||| || || |||||||| | | || | || || || || || | | Sbjct 1401149 CATGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA 1401090 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| || || | || || | |||||| ||||| || || | ||| ||||| Sbjct 1401089 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAG 1401030 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA-TCATTATTATG 19139 ||||| || || || ||||| ||||| || | | || || || | || |||| || Sbjct 1401029 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCA-AAGGAGGAGTCCTTATCCTG 1400971 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | ||||| |||||||||||| | || || || ||||| || | || Sbjct 1400970 GATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 1400911 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || ||||| | |||| | | || || | |||| || || | | ||| | Sbjct 1400910 GAAGAGATAGGTTCGCTGGGCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGT 1400851 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || |||||||| || || || ||||| || ||||| || || | || || | || Sbjct 1400850 CTCGGAATGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGAT 1400791 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| || |||| || |||| ||||| | || || || || || |||||| || || Sbjct 1400790 CTGGACCTCACCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 1400731 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA---ATGTATTCCA 19436 || || || | | || | ||| | ||||| | |||| | ||||| Sbjct 1400730 GAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCA 1400671 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || | | ||| || || | ||| | || ||| | ||||| || |||||||| || || Sbjct 1400670 GTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTT 1400611 Query 19497 TTTATACATGTTCCATAT 19514 || ||||| | ||| || Sbjct 1400610 CTTGTACATTTGCCAAAT 1400593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107724966920