Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq5 205 3e-47
seq7 161 3e-34
seq3 107 6e-18
seq1 107 6e-18
>seq5
Length=2590615
Score = 205 bits (226), Expect = 3e-47
Identities = 581/881 (66%), Gaps = 19/881 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || | ||| ||| ||| ||||| || || |||||| || | ||||| |||||
Sbjct 1618640 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1618699
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | |||||| ||||||||||| || ||| ||||| |||| ||||| |||| ||
Sbjct 1618700 GCTCTTGCGGTTACAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1618759
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | | || || ||| |||| |||| |||
Sbjct 1618760 CTCGAGAATGGCGTACCAAAGCTTCTGAGCCTTGATTGTCTTGCGACCCTTGCCCTCCTT 1618819
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
||| || |||| || | ||| | | | ||||| ||||| || || || ||||||
Sbjct 1618820 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 1618877
Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924
|||| | ||| || | ||| | ||| | || || | | |||||| ||| ||
Sbjct 1618878 CACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATGAAA 1618934
Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984
| |||| ||||| || |||||| || | || |||||| | |||||
Sbjct 1618935 AGATCAGGGATCCAAAGGGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGG 1618994
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || | ||| || | ||||| || ||||| || || || |||
Sbjct 1618995 TTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 1619054
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
||| ||| | |||| |||||||| || |||||||||||||| || |||||||||
Sbjct 1619055 AAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACA 1619114
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161
| |||||||||| || |||||| || || || ||||| ||| || | || ||||
Sbjct 1619115 CGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTA 1619174
Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220
| |||| | || | || ||| ||||||||||| | |||| || || || || ||
Sbjct 1619175 GCACGAATACGGTGCACATTTAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACA 1619233
Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGC 156279
||| | ||||| | | || || |||||| || || | ||| | | ||| |||
Sbjct 1619234 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGC 1619292
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || ||||| || | || || || || ||||| || || || | ||||| | |
Sbjct 1619293 AAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGA 1619352
Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGA 156398
| |||| ||||||| || |||||||||| | ||| | || | |||| |
Sbjct 1619353 AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAG- 1619411
Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458
|||| | ||| || | ||| ||| |||||||| ||||| |||||| || |||||
Sbjct 1619412 ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATC 1619471
Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| ||||||| || |||| ||| || || || || ||
Sbjct 1619472 TTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1619512
>seq7
Length=1585612
Score = 161 bits (178), Expect = 3e-34
Identities = 248/351 (71%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366
|| || ||| ||| || || | ||||| |||||| || || ||||| || ||
Sbjct 1400797 GAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATTCATTCCGAGACCTAC 1400856
Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCC 133426
|| || || || || |||||||| || ||| |||| | | || |||||||||
Sbjct 1400857 TCCCTCCTTATCGACACATACATCAAGGAGCCCGCCCAGCGAACCTATCTCTTCAACGCC 1400916
Query 133427 ATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA 133485
||| | || |||| || || |||||| |||||||||| || ||||||||||||
Sbjct 1400917 ATT-GAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCAGGA 1400975
Query 133486 CAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttttt 133545
||| | ||||| ||||||||||| ||||||| || ||||| || || ||
Sbjct 1400976 TAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTT 1401035
Query 133546 CAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTG 133605
||||||||| ||| |||||| || ||||| || ||||||||| | | ||||| |||
Sbjct 1401036 CAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAC 1401095
Query 133606 TTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
||| || ||||| || || || | ||||||| |||||||| || |||||
Sbjct 1401096 TTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGC 1401146
>seq3
Length=2882635
Score = 107 bits (118), Expect = 6e-18
Identities = 391/600 (65%), Gaps = 38/600 (6%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | || || ||||| | | ||||||| || | ||| | || ||
Sbjct 514864 ATGAGTCCACAAATCTCGCAAACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 514923
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || |||||||| | ||||||||||||||| ||||| || |||||
Sbjct 514924 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAT 514983
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584
|| ||||||||||| ||||| | ||||||| |||| || || || | ||| | | | |
Sbjct 514984 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGTCATGATCTGA--ACTG 515041
Query 251585 GACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
|||| | ||||| || ||| || | ||||| || ||||||||||||
Sbjct 515042 GACCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAG 515097
Query 251641 AATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATA 251696
| | || |||| ||| | || || | || || | |||||| || | || ||
Sbjct 515098 TAGGTAGGTCCGAAGAACACCTGGGCACGGA-GCTTTCG---TCCAGTGTGACCATTGTA 515153
Query 251697 CATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC- 251755
||| || ||| ||| ||||| ||||| | ||| ||| |||| | ||
Sbjct 515154 CATGACCTCGAATCCTCGAGATTGGTAACCGTGCTTC-----CTCAGAAGTTCTGAGACT 515208
Query 251756 CAATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCA 251809
|||| || | || | | || || |||| || | | |||| | |
Sbjct 515209 GAATC--GACTGTGACATCAGTGAACGGTGTAGCGTCACCCTCCATACCCTCCAGCGTTG 515266
Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869
| || |||| | ||| ||| ||| ||||| || ||||| || ||||| || |
Sbjct 515267 AAACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGACGGAATGGCGT 515326
Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929
| || ||||| ||||| ||||| | || || || |||| |||||||||| | |
Sbjct 515327 GAGGGTTGATAATGATATCGGGAGTGAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GT 515385
Query 251930 CAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| || |||| || || || |||||||| |||||||||||| ||||| ||||||||
Sbjct 515386 CGAT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 515444
>seq1
Length=6144005
Score = 107 bits (118), Expect = 6e-18
Identities = 204/296 (69%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||||| | ||||| || || |||||||||||||| ||| | || || || ||
Sbjct 3937964 TCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGCA 3938023
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690
|||||||| ||||| | |||||| |||| || |||||||| | || | || || ||
Sbjct 3938024 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTC-GCTGGGAGTGAG 3938082
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | | | ||| |||| ||||| ||||| ||||| || || | ||| ||||||
Sbjct 3938083 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 3938142
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
||||| || | || | | || | || | || |||||||| || || || | ||
Sbjct 3938143 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 3938202
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864
||| || | || | |||| || |||||||| || || | ||||||||| ||
Sbjct 3938203 CTGACCGACAAGCGCAGTCATTTGAGAAATATTGATAGATGA--GCCCTTGGAACC 3938256
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || ||||| |||| ||||| |||||||| ||||| ||
Sbjct 3937187 AGAATTTCCTTGAGACGTGGCACACCGAGGGTAACGTT---CTTGGACGACACACCGGCG 3937243
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || ||||| || | || |||| ||||||||||||| || || || |
Sbjct 3937244 AAATGGAAGGTGTTCAGTGTCATCTGGGTAGCTGGCTCACCAATAGACTGCGCAGCCAGA 3937303
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 3937304 ACACCAACCATTTCACCAGG 3937323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471814714777561
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |