Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq7 143 4e-28
seq4 120 5e-21
seq5 118 2e-20
>seq7
Length=1585612
Score = 143 bits (158), Expect = 4e-28
Identities = 234/330 (71%), Gaps = 9/330 (3%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCT-AAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397
||| ||||| ||| ||| | |||||| |||| |||| || |||||||| || |||
Sbjct 1401129 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA--CCAGGCATGAGACCACGC 1401072
Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457
||||||||||| ||||| | ||| || ||| ||||| ||||| || || |||
Sbjct 1401071 TTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCA 1401012
Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517
||| | ||||| |||| |||||| | | | ||| | | |||||| || |||
Sbjct 1401011 AAGGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCC 1400955
Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 794576
|| || ||||| || | | |||| | || || |||||| ||||| | ||| |
Sbjct 1400954 CAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTCG- 1400896
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
|| | | || ||||||| ||| |||||||| ||||| ||||||||||| || || |||||
Sbjct 1400895 CTGGGCGGGCTCCTTGATGTATGTGTCGATAAGGAGGGAGTAGGTCTCGGAATGAATGTT 1400836
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|| || |||||||||||| || |||||
Sbjct 1400835 CTCCATCATGATCTGGAAGCCGTAGAAGCA 1400806
Score = 125 bits (138), Expect = 1e-22
Identities = 185/259 (71%), Gaps = 5/259 (2%)
Strand=Plus/Minus
Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951
||| || ||||| || ||| | || ||| |||||| |||||||||||||| | ||
Sbjct 1401450 GACACCAGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 1401391
Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009
||||| |||||| | ||| ||||||| | | |||| ||||||| || |
Sbjct 1401390 GGAGATGTTCTCCATAAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAG 1401331
Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069
|||||| ||| || || || |||||||| ||||||||||| ||||||| | | ||||
Sbjct 1401330 AGCGAC--AAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTC 1401273
Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129
||||||| ||| || ||| || | ||| ||| ||||| | ||| || ||||||
Sbjct 1401272 ATGCCGAGGAGGGCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCA 1401213
Query 794130 TCGATGATGATCTGCCTGG 794148
|| ||||||| | |||||
Sbjct 1401212 TCAGTGATGATAT-CCTGG 1401195
>seq4
Length=2598818
Score = 120 bits (132), Expect = 5e-21
Identities = 93/111 (84%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||||||||||||||| || || || | || ||||||||||| |||||| | |
Sbjct 2464952 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTTGGCTGCAAGACCGTTGCCAACATGA 2464893
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
||||||||||||| |||||||| |||||||| || || ||||| | | |||
Sbjct 2464892 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTCAACATTACGAACG 2464842
>seq5
Length=2590615
Score = 118 bits (130), Expect = 2e-20
Identities = 181/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||||||||| || || |||| ||| ||||| || ||||| || |||| || || ||
Sbjct 1619081 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGA 1619140
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||| || || | ||| | ||| | || || | |||| | | ||
Sbjct 1619141 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 1619200
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| || || ||| ||||||||| | || || | || || || |||||||| |||||
Sbjct 1619201 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1619260
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| |||| ||||||| || | || ||||| || || ||| || | | |||||
Sbjct 1619261 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1619320
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||||||||||||||||||
Sbjct 1619321 GGCATTGAAGAGCGTGGG 1619338
Score = 107 bits (118), Expect = 3e-17
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||||||||| |||||||||||| |||| || || ||| |||
Sbjct 2435104 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGCAG 2435163
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| || || || | |||||||||||| ||||
Sbjct 2435164 GATGAGACGGACAGAGGTCTGGATCTCTCGGG 2435195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916230124692167
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |