Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02] 153 sequences; 47,778,485 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-16 >seq1 Length=6144005 Score = 104 bits (114), Expect = 2e-16 Identities = 197/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| || || || || ||||| ||||| | ||| | || | |||| | || Sbjct 3800618 ACCAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 3800677 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || || |||| | | |||| ||||| ||| |||||||| | ||| Sbjct 3800678 TCGAAGATACCCTCCTCAATGGTAAGGAGAGACACATCGAAGGTACCACCACCAAGATCG 3800737 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || || || || |||||||| || |||| |||||| Sbjct 3800738 AAGATCAGGACGTTGCGCTCGCCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCA 3800797 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 ||||| || || || || |||| | ||| |||||||| || || || ||||| || Sbjct 3800798 GCAGTAGGCTCGTTGATGATTCGGAGAACGTTAAGACCGGCGATGAGACCAGCATCCTTG 3800857 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||||||| | || || ||||| || || ||||| ||||| | ||| || Sbjct 3800858 GTGGCTTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTCACAACAGC 3800907 Score = 98.7 bits (108), Expect = 7e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| || |||||| || |||| || |||||||| ||||||||||| | || || ||| Sbjct 3939513 GGTAAGGAGGGTCGTCTTCGAGGTAACTTGATGGGTAAGCGTGTCGACTTTTCGGCTCGT 3939454 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||| | || || |||| | || ||||||||||||| || |||| Sbjct 3939453 ACTGTCATTACTGGTGATGCCAACCTTTCTCTACACGAGGTTGGTGTTCCTCGCAGTATT 3939394 Query 432408 GC 432409 || Sbjct 3939393 GC 3939392 Score = 91.5 bits (100), Expect = 1e-12 Identities = 279/429 (65%), Gaps = 3/429 (1%) Strand=Plus/Plus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| ||| || ||||| ||| || || || |||| | || || | Sbjct 3799609 ATTGGTAATGACAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACGGCGGAAACGTTCAT 3799668 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||||| |||||||| | ||| || || || ||||| || || || || | | ||||| Sbjct 3799669 GATACCGTTGGCATCAAGATCGAAGGTAACCTCAATCTGGGGAACACCACGAGGTGCAGG 3799728 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||||| || | | || | |||| | ||||| || || ||| || || || Sbjct 3799729 GGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTATTGTCCTTGGTGCGTTGACGCTC 3799788 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||||| | | ||||||| ||| ||| || || || || | || | || || Sbjct 3799789 ACCCTCGTAGACTTGGATAAGAACACCAGGCTGGTTGTCGGAGAAGGTGGAGAAGACCTC 3799848 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 ||| || || ||||| || ||||| | || | |||||||| ||||||||||| Sbjct 3799849 GGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGC 3799908 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 || || | ||| ||||| ||||| | ||||| | || | || | || | | || Sbjct 3799909 GGTCTCGATACCGAGAGAGAGAGGGGCAACATCGAGAAGCAGGATCTCGTTGGTGGCCTT 3799968 Query 281738 TCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | | || | ||| ||||| || || || | || ||||| || |||||||| || Sbjct 3799969 GCTGGAGGTGTCACCGGAGAGAATCGCAGCCTGGACGGCGGCACCGTAGGCAACAGCCTC 3800028 Query 281797 ATCAGGATT 281805 |||||| || Sbjct 3800029 ATCAGGGTT 3800037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740622888346578