Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20pininemorale_20[genbank_20GCA_5F002165215.1_202017-06-02]
153 sequences; 47,778,485 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-16
>seq1
Length=6144005
Score = 104 bits (114), Expect = 2e-16
Identities = 197/290 (68%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
|| ||||| || || || || ||||| ||||| | ||| | || | |||| | ||
Sbjct 3800618 ACCAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 3800677
Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301
| ||| | || || |||| | | |||| ||||| ||| |||||||| | |||
Sbjct 3800678 TCGAAGATACCCTCCTCAATGGTAAGGAGAGACACATCGAAGGTACCACCACCAAGATCG 3800737
Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361
|| || || || || || || || || |||||||| || |||| ||||||
Sbjct 3800738 AAGATCAGGACGTTGCGCTCGCCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCA 3800797
Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421
||||| || || || || |||| | ||| |||||||| || || || ||||| ||
Sbjct 3800798 GCAGTAGGCTCGTTGATGATTCGGAGAACGTTAAGACCGGCGATGAGACCAGCATCCTTG 3800857
Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471
|||||||| | || || ||||| || || ||||| ||||| | ||| ||
Sbjct 3800858 GTGGCTTGACGCTGAGAGTCGTTGAAGTAGGCAGGGACAGTCACAACAGC 3800907
Score = 98.7 bits (108), Expect = 7e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
||||| || |||||| || |||| || |||||||| ||||||||||| | || || |||
Sbjct 3939513 GGTAAGGAGGGTCGTCTTCGAGGTAACTTGATGGGTAAGCGTGTCGACTTTTCGGCTCGT 3939454
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| || |||||| |||| | || || |||| | || ||||||||||||| || ||||
Sbjct 3939453 ACTGTCATTACTGGTGATGCCAACCTTTCTCTACACGAGGTTGGTGTTCCTCGCAGTATT 3939394
Query 432408 GC 432409
||
Sbjct 3939393 GC 3939392
Score = 91.5 bits (100), Expect = 1e-12
Identities = 279/429 (65%), Gaps = 3/429 (1%)
Strand=Plus/Plus
Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439
||| ||||| ||| || ||||| ||| || || || |||| | || || |
Sbjct 3799609 ATTGGTAATGACAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACGGCGGAAACGTTCAT 3799668
Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499
||||| |||||||| | ||| || || || ||||| || || || || | | |||||
Sbjct 3799669 GATACCGTTGGCATCAAGATCGAAGGTAACCTCAATCTGGGGAACACCACGAGGTGCAGG 3799728
Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559
||||| || | | || | |||| | ||||| || || ||| || || ||
Sbjct 3799729 GGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTATTGTCCTTGGTGCGTTGACGCTC 3799788
Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619
||||||| | | ||||||| ||| ||| || || || || | || | || ||
Sbjct 3799789 ACCCTCGTAGACTTGGATAAGAACACCAGGCTGGTTGTCGGAGAAGGTGGAGAAGACCTC 3799848
Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679
||| || || ||||| || ||||| | || | |||||||| |||||||||||
Sbjct 3799849 GGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGC 3799908
Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737
|| || | ||| ||||| ||||| | ||||| | || | || | || | | ||
Sbjct 3799909 GGTCTCGATACCGAGAGAGAGAGGGGCAACATCGAGAAGCAGGATCTCGTTGGTGGCCTT 3799968
Query 281738 TCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796
| | || | ||| ||||| || || || | || ||||| || |||||||| ||
Sbjct 3799969 GCTGGAGGTGTCACCGGAGAGAATCGCAGCCTGGACGGCGGCACCGTAGGCAACAGCCTC 3800028
Query 281797 ATCAGGATT 281805
|||||| ||
Sbjct 3800029 ATCAGGGTT 3800037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740622888346578
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |